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CCT7 (chaperonin containing TCP1 subunit 7)

Identity

Alias_nameschaperonin containing TCP1, subunit 7 (eta)
Alias_symbol (synonym)Ccth
Nip7-1
Other aliasCCTETA
CCTH
NIP7-1
TCP1ETA
HGNC (Hugo) CCT7
LocusID (NCBI) 10574
Atlas_Id 61604
Location 2p13.2  [Link to chromosome band 2p13]
Location_base_pair Starts at 73234236 and ends at 73253022 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCT7 (2p13.2) / CCT7 (2p13.2)CCT7 (2p13.2) / MOSPD3 (7q22.1)ENO1 (1p36.23) / CCT7 (2p13.2)
HLA-B (6p21.33) / CCT7 (2p13.2)RIMS3 (1p34.2) / CCT7 (2p13.2)SMAP2 (1p34.2) / CCT7 (2p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCT7   1622
Cards
Entrez_Gene (NCBI)CCT7  10574  chaperonin containing TCP1 subunit 7
AliasesCCTETA; CCTH; NIP7-1; TCP1ETA
GeneCards (Weizmann)CCT7
Ensembl hg19 (Hinxton)ENSG00000135624 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135624 [Gene_View]  chr2:73234236-73253022 [Contig_View]  CCT7 [Vega]
ICGC DataPortalENSG00000135624
TCGA cBioPortalCCT7
AceView (NCBI)CCT7
Genatlas (Paris)CCT7
WikiGenes10574
SOURCE (Princeton)CCT7
Genetics Home Reference (NIH)CCT7
Genomic and cartography
GoldenPath hg38 (UCSC)CCT7  -     chr2:73234236-73253022 +  2p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCT7  -     2p13.2   [Description]    (hg19-Feb_2009)
EnsemblCCT7 - 2p13.2 [CytoView hg19]  CCT7 - 2p13.2 [CytoView hg38]
Mapping of homologs : NCBICCT7 [Mapview hg19]  CCT7 [Mapview hg38]
OMIM605140   
Gene and transcription
Genbank (Entrez)AF026292 AI571508 AK098549 AK098825 AK222478
RefSeq transcript (Entrez)NM_001009570 NM_001166284 NM_001166285 NM_006429
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCT7
Cluster EST : UnigeneHs.368149 [ NCBI ]
CGAP (NCI)Hs.368149
Alternative Splicing GalleryENSG00000135624
Gene ExpressionCCT7 [ NCBI-GEO ]   CCT7 [ EBI - ARRAY_EXPRESS ]   CCT7 [ SEEK ]   CCT7 [ MEM ]
Gene Expression Viewer (FireBrowse)CCT7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10574
GTEX Portal (Tissue expression)CCT7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99832   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99832  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99832
Splice isoforms : SwissVarQ99832
PhosPhoSitePlusQ99832
Domaine pattern : Prosite (Expaxy)TCP1_1 (PS00750)    TCP1_2 (PS00751)    TCP1_3 (PS00995)   
Domains : Interpro (EBI)Chap_CCT_eta    Chaperone_TCP-1    Chaperonin_TCP-1_CS    Cpn60/TCP-1    GroEL-like_apical_dom    GROEL-like_equatorial    TCP-1-like_intermed   
Domain families : Pfam (Sanger)Cpn60_TCP1 (PF00118)   
Domain families : Pfam (NCBI)pfam00118   
Conserved Domain (NCBI)CCT7
DMDM Disease mutations10574
Blocks (Seattle)CCT7
SuperfamilyQ99832
Human Protein AtlasENSG00000135624
Peptide AtlasQ99832
HPRD06896
IPIIPI00018465   IPI01015196   IPI01015939   IPI00952671   IPI00952607   IPI00552072   IPI00916908   IPI01014868   
Protein Interaction databases
DIP (DOE-UCLA)Q99832
IntAct (EBI)Q99832
FunCoupENSG00000135624
BioGRIDCCT7
STRING (EMBL)CCT7
ZODIACCCT7
Ontologies - Pathways
QuickGOQ99832
Ontology : AmiGOzona pellucida receptor complex  protein binding  ATP binding  cytoplasm  mitochondrion  cytosol  chaperonin-containing T-complex  chaperonin-containing T-complex  microtubule  protein folding  'de novo' protein folding  binding of sperm to zona pellucida  positive regulation of telomere maintenance via telomerase  identical protein binding  protein binding involved in protein folding  cell body  protein stabilization  unfolded protein binding  chaperone-mediated protein folding  extracellular exosome  toxin transport  positive regulation of establishment of protein localization to telomere  positive regulation of protein localization to Cajal body  positive regulation of telomerase RNA localization to Cajal body  
Ontology : EGO-EBIzona pellucida receptor complex  protein binding  ATP binding  cytoplasm  mitochondrion  cytosol  chaperonin-containing T-complex  chaperonin-containing T-complex  microtubule  protein folding  'de novo' protein folding  binding of sperm to zona pellucida  positive regulation of telomere maintenance via telomerase  identical protein binding  protein binding involved in protein folding  cell body  protein stabilization  unfolded protein binding  chaperone-mediated protein folding  extracellular exosome  toxin transport  positive regulation of establishment of protein localization to telomere  positive regulation of protein localization to Cajal body  positive regulation of telomerase RNA localization to Cajal body  
NDEx NetworkCCT7
Atlas of Cancer Signalling NetworkCCT7
Wikipedia pathwaysCCT7
Orthology - Evolution
OrthoDB10574
GeneTree (enSembl)ENSG00000135624
Phylogenetic Trees/Animal Genes : TreeFamCCT7
HOVERGENQ99832
HOGENOMQ99832
Homologs : HomoloGeneCCT7
Homology/Alignments : Family Browser (UCSC)CCT7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCT7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCT7
dbVarCCT7
ClinVarCCT7
1000_GenomesCCT7 
Exome Variant ServerCCT7
ExAC (Exome Aggregation Consortium)CCT7 (select the gene name)
Genetic variants : HAPMAP10574
Genomic Variants (DGV)CCT7 [DGVbeta]
DECIPHERCCT7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCT7 
Mutations
ICGC Data PortalCCT7 
TCGA Data PortalCCT7 
Broad Tumor PortalCCT7
OASIS PortalCCT7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCT7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCT7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch CCT7
DgiDB (Drug Gene Interaction Database)CCT7
DoCM (Curated mutations)CCT7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCT7 (select a term)
intoGenCCT7
Cancer3DCCT7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605140   
Orphanet
MedgenCCT7
Genetic Testing Registry CCT7
NextProtQ99832 [Medical]
TSGene10574
GENETestsCCT7
Huge Navigator CCT7 [HugePedia]
snp3D : Map Gene to Disease10574
BioCentury BCIQCCT7
ClinGenCCT7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10574
Chemical/Pharm GKB GenePA26185
Clinical trialCCT7
Miscellaneous
canSAR (ICR)CCT7 (select the gene name)
Probes
Litterature
PubMed91 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCT7
EVEXCCT7
GoPubMedCCT7
iHOPCCT7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri May 19 11:05:08 CEST 2017

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