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CCZ1 (CCZ1 homolog, vacuolar protein trafficking and biogenesis associated)

Identity

Alias_namesC7orf28A
chromosome 7 open reading frame 28A
CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)
Alias_symbol (synonym)CGI-43
CCZ1A
Other aliasH_DJ1163J12.2
HGNC (Hugo) CCZ1
LocusID (NCBI) 51622
Atlas_Id 61607
Location 7p22.1  [Link to chromosome band 7p22]
Location_base_pair Starts at 5898710 and ends at 5925972 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCZ1 (7p22.1) / COG7 (16p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCZ1   21691
Cards
Entrez_Gene (NCBI)CCZ1  51622  CCZ1 homolog, vacuolar protein trafficking and biogenesis associated
AliasesC7orf28A; CCZ1A; CGI-43; H_DJ1163J12.2
GeneCards (Weizmann)CCZ1
Ensembl hg19 (Hinxton)ENSG00000122674 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122674 [Gene_View]  chr7:5898710-5925972 [Contig_View]  CCZ1 [Vega]
ICGC DataPortalENSG00000122674
TCGA cBioPortalCCZ1
AceView (NCBI)CCZ1
Genatlas (Paris)CCZ1
WikiGenes51622
SOURCE (Princeton)CCZ1
Genetics Home Reference (NIH)CCZ1
Genomic and cartography
GoldenPath hg38 (UCSC)CCZ1  -     chr7:5898710-5925972 +  7p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCZ1  -     7p22.1   [Description]    (hg19-Feb_2009)
EnsemblCCZ1 - 7p22.1 [CytoView hg19]  CCZ1 - 7p22.1 [CytoView hg38]
Mapping of homologs : NCBICCZ1 [Mapview hg19]  CCZ1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151801 AK090536 BC067810 BC132749 BC132751
RefSeq transcript (Entrez)NM_015622
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCZ1
Cluster EST : UnigeneHs.530000 [ NCBI ]
CGAP (NCI)Hs.530000
Alternative Splicing GalleryENSG00000122674
Gene ExpressionCCZ1 [ NCBI-GEO ]   CCZ1 [ EBI - ARRAY_EXPRESS ]   CCZ1 [ SEEK ]   CCZ1 [ MEM ]
Gene Expression Viewer (FireBrowse)CCZ1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51622
GTEX Portal (Tissue expression)CCZ1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP86791   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP86791  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP86791
Splice isoforms : SwissVarP86791
PhosPhoSitePlusP86791
Domains : Interpro (EBI)DUF1712_fun   
Domain families : Pfam (Sanger)DUF1712 (PF08217)   
Domain families : Pfam (NCBI)pfam08217   
Conserved Domain (NCBI)CCZ1
DMDM Disease mutations51622
Blocks (Seattle)CCZ1
SuperfamilyP86791
Human Protein AtlasENSG00000122674
Peptide AtlasP86791
HPRD12915
Protein Interaction databases
DIP (DOE-UCLA)P86791
IntAct (EBI)P86791
FunCoupENSG00000122674
BioGRIDCCZ1
STRING (EMBL)CCZ1
ZODIACCCZ1
Ontologies - Pathways
QuickGOP86791
Ontology : AmiGOguanyl-nucleotide exchange factor activity  protein binding  lysosome  lysosomal membrane  cytosol  cytosol  vesicle-mediated transport  aggresome  vesicle  intracellular membrane-bounded organelle  positive regulation of GTPase activity  membrane organization  
Ontology : EGO-EBIguanyl-nucleotide exchange factor activity  protein binding  lysosome  lysosomal membrane  cytosol  cytosol  vesicle-mediated transport  aggresome  vesicle  intracellular membrane-bounded organelle  positive regulation of GTPase activity  membrane organization  
NDEx NetworkCCZ1
Atlas of Cancer Signalling NetworkCCZ1
Wikipedia pathwaysCCZ1
Orthology - Evolution
OrthoDB51622
GeneTree (enSembl)ENSG00000122674
Phylogenetic Trees/Animal Genes : TreeFamCCZ1
HOVERGENP86791
HOGENOMP86791
Homologs : HomoloGeneCCZ1
Homology/Alignments : Family Browser (UCSC)CCZ1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCZ1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCZ1
dbVarCCZ1
ClinVarCCZ1
1000_GenomesCCZ1 
Exome Variant ServerCCZ1
ExAC (Exome Aggregation Consortium)CCZ1 (select the gene name)
Genetic variants : HAPMAP51622
Genomic Variants (DGV)CCZ1 [DGVbeta]
DECIPHERCCZ1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCZ1 
Mutations
ICGC Data PortalCCZ1 
TCGA Data PortalCCZ1 
Broad Tumor PortalCCZ1
OASIS PortalCCZ1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCCZ1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCCZ1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCZ1
DgiDB (Drug Gene Interaction Database)CCZ1
DoCM (Curated mutations)CCZ1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCZ1 (select a term)
intoGenCCZ1
Cancer3DCCZ1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCZ1
Genetic Testing Registry CCZ1
NextProtP86791 [Medical]
TSGene51622
GENETestsCCZ1
Target ValidationCCZ1
Huge Navigator CCZ1 [HugePedia]
snp3D : Map Gene to Disease51622
BioCentury BCIQCCZ1
ClinGenCCZ1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51622
Chemical/Pharm GKB GenePA165617711
Clinical trialCCZ1
Miscellaneous
canSAR (ICR)CCZ1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCZ1
EVEXCCZ1
GoPubMedCCZ1
iHOPCCZ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:50 CEST 2017

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