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CCZ1B (CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated)

Identity

Alias_namesC7orf28B
chromosome 7 open reading frame 28B
CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated B
Alias_symbol (synonym)DKFZP586I1023
H_NH0577018.2
MGC19819
Other alias
HGNC (Hugo) CCZ1B
LocusID (NCBI) 221960
Atlas_Id 61608
Location 7p22.1  [Link to chromosome band 7p22]
Location_base_pair Starts at 6798935 and ends at 6826295 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCZ1B (7p22.1) / EIF3L (22q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CCZ1B   21717
Cards
Entrez_Gene (NCBI)CCZ1B  221960  CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated
AliasesC7orf28B; H_NH0577018.2
GeneCards (Weizmann)CCZ1B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:6798935-6826295 [Contig_View]  CCZ1B [Vega]
TCGA cBioPortalCCZ1B
AceView (NCBI)CCZ1B
Genatlas (Paris)CCZ1B
WikiGenes221960
SOURCE (Princeton)CCZ1B
Genetics Home Reference (NIH)CCZ1B
Genomic and cartography
GoldenPath hg38 (UCSC)CCZ1B  -     chr7:6798935-6826295 -  7p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCZ1B  -     7p22.1   [Description]    (hg19-Feb_2009)
EnsemblCCZ1B - 7p22.1 [CytoView hg19]  CCZ1B - 7p22.1 [CytoView hg38]
Mapping of homologs : NCBICCZ1B [Mapview hg19]  CCZ1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000993 AK292326 AK296026 AL050215 BC010130
RefSeq transcript (Entrez)NM_198097
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCZ1B
Cluster EST : UnigeneHs.567779 [ NCBI ]
CGAP (NCI)Hs.567779
Gene ExpressionCCZ1B [ NCBI-GEO ]   CCZ1B [ EBI - ARRAY_EXPRESS ]   CCZ1B [ SEEK ]   CCZ1B [ MEM ]
Gene Expression Viewer (FireBrowse)CCZ1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221960
GTEX Portal (Tissue expression)CCZ1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP86790   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP86790  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP86790
Splice isoforms : SwissVarP86790
PhosPhoSitePlusP86790
Domains : Interpro (EBI)DUF1712_fun   
Domain families : Pfam (Sanger)DUF1712 (PF08217)   
Domain families : Pfam (NCBI)pfam08217   
Conserved Domain (NCBI)CCZ1B
DMDM Disease mutations221960
Blocks (Seattle)CCZ1B
SuperfamilyP86790
Peptide AtlasP86790
HPRD12916
IPIIPI01014287   IPI00883940   IPI00477526   
Protein Interaction databases
DIP (DOE-UCLA)P86790
IntAct (EBI)P86790
BioGRIDCCZ1B
STRING (EMBL)CCZ1B
ZODIACCCZ1B
Ontologies - Pathways
QuickGOP86790
Ontology : AmiGOlysosome  lysosomal membrane  cytosol  vesicle-mediated transport  aggresome  vesicle  intracellular membrane-bounded organelle  
Ontology : EGO-EBIlysosome  lysosomal membrane  cytosol  vesicle-mediated transport  aggresome  vesicle  intracellular membrane-bounded organelle  
NDEx NetworkCCZ1B
Atlas of Cancer Signalling NetworkCCZ1B
Wikipedia pathwaysCCZ1B
Orthology - Evolution
OrthoDB221960
Phylogenetic Trees/Animal Genes : TreeFamCCZ1B
HOVERGENP86790
HOGENOMP86790
Homologs : HomoloGeneCCZ1B
Homology/Alignments : Family Browser (UCSC)CCZ1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCCZ1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CCZ1B
dbVarCCZ1B
ClinVarCCZ1B
1000_GenomesCCZ1B 
Exome Variant ServerCCZ1B
ExAC (Exome Aggregation Consortium)CCZ1B (select the gene name)
Genetic variants : HAPMAP221960
Genomic Variants (DGV)CCZ1B [DGVbeta]
DECIPHERCCZ1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCCZ1B 
Mutations
ICGC Data PortalCCZ1B 
TCGA Data PortalCCZ1B 
Broad Tumor PortalCCZ1B
OASIS PortalCCZ1B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCCZ1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CCZ1B
DgiDB (Drug Gene Interaction Database)CCZ1B
DoCM (Curated mutations)CCZ1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CCZ1B (select a term)
intoGenCCZ1B
Cancer3DCCZ1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCCZ1B
Genetic Testing Registry CCZ1B
NextProtP86790 [Medical]
TSGene221960
GENETestsCCZ1B
Target ValidationCCZ1B
Huge Navigator CCZ1B [HugePedia]
snp3D : Map Gene to Disease221960
BioCentury BCIQCCZ1B
ClinGenCCZ1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221960
Chemical/Pharm GKB GenePA134930339
Clinical trialCCZ1B
Miscellaneous
canSAR (ICR)CCZ1B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCZ1B
EVEXCCZ1B
GoPubMedCCZ1B
iHOPCCZ1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:50 CEST 2017

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