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CD101 (CD101 molecule)

Identity

Alias_namesIGSF2
immunoglobulin superfamily
Alias_symbol (synonym)V7
Other aliasEWI-101
HGNC (Hugo) CD101
LocusID (NCBI) 9398
Atlas_Id 52412
Location 1p13.1  [Link to chromosome band 1p13]
Location_base_pair Starts at 117544372 and ends at 117579173 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CD101 (1p13.1) / SEC31A (4q21.22)MAN1A2 (1p12) / CD101 (1p13.1)MAN1A2 1p12 / CD101 1p13.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD101   5949
Cards
Entrez_Gene (NCBI)CD101  9398  CD101 molecule
AliasesEWI-101; IGSF2; V7
GeneCards (Weizmann)CD101
Ensembl hg19 (Hinxton)ENSG00000134256 [Gene_View]  chr1:117544372-117579173 [Contig_View]  CD101 [Vega]
Ensembl hg38 (Hinxton)ENSG00000134256 [Gene_View]  chr1:117544372-117579173 [Contig_View]  CD101 [Vega]
ICGC DataPortalENSG00000134256
TCGA cBioPortalCD101
AceView (NCBI)CD101
Genatlas (Paris)CD101
WikiGenes9398
SOURCE (Princeton)CD101
Genetics Home Reference (NIH)CD101
Genomic and cartography
GoldenPath hg19 (UCSC)CD101  -     chr1:117544372-117579173 +  1p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CD101  -     1p13.1   [Description]    (hg38-Dec_2013)
EnsemblCD101 - 1p13.1 [CytoView hg19]  CD101 - 1p13.1 [CytoView hg38]
Mapping of homologs : NCBICD101 [Mapview hg19]  CD101 [Mapview hg38]
OMIM604516   
Gene and transcription
Genbank (Entrez)AI791963 AK298237 AK307542 BC130327 BC136484
RefSeq transcript (Entrez)NM_001256106 NM_001256109 NM_001256111 NM_004258
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)CD101
Cluster EST : UnigeneHs.654598 [ NCBI ]
CGAP (NCI)Hs.654598
Alternative Splicing GalleryENSG00000134256
Gene ExpressionCD101 [ NCBI-GEO ]   CD101 [ EBI - ARRAY_EXPRESS ]   CD101 [ SEEK ]   CD101 [ MEM ]
Gene Expression Viewer (FireBrowse)CD101 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9398
GTEX Portal (Tissue expression)CD101
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ93033   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ93033  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ93033
Splice isoforms : SwissVarQ93033
PhosPhoSitePlusQ93033
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Dihydroorotase_CS    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)I-set (PF07679)    V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07679    pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)CD101
DMDM Disease mutations9398
Blocks (Seattle)CD101
SuperfamilyQ93033
Human Protein AtlasENSG00000134256
Peptide AtlasQ93033
HPRD05154
IPIIPI00003531   
Protein Interaction databases
DIP (DOE-UCLA)Q93033
IntAct (EBI)Q93033
FunCoupENSG00000134256
BioGRIDCD101
STRING (EMBL)CD101
ZODIACCD101
Ontologies - Pathways
QuickGOQ93033
Ontology : AmiGOpositive regulation of myeloid leukocyte differentiation  plasma membrane  cell surface receptor signaling pathway  metabolic process  integral component of membrane  hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides  extracellular exosome  
Ontology : EGO-EBIpositive regulation of myeloid leukocyte differentiation  plasma membrane  cell surface receptor signaling pathway  metabolic process  integral component of membrane  hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides  extracellular exosome  
NDEx NetworkCD101
Atlas of Cancer Signalling NetworkCD101
Wikipedia pathwaysCD101
Orthology - Evolution
OrthoDB9398
GeneTree (enSembl)ENSG00000134256
Phylogenetic Trees/Animal Genes : TreeFamCD101
HOVERGENQ93033
HOGENOMQ93033
Homologs : HomoloGeneCD101
Homology/Alignments : Family Browser (UCSC)CD101
Gene fusions - Rearrangements
Fusion : MitelmanMAN1A2/CD101 [1p12/1p13.1]  [t(1;1)(p12;p13)]  
Fusion: TCGAMAN1A2 1p12 CD101 1p13.1 BRCA OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD101 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD101
dbVarCD101
ClinVarCD101
1000_GenomesCD101 
Exome Variant ServerCD101
ExAC (Exome Aggregation Consortium)CD101 (select the gene name)
Genetic variants : HAPMAP9398
Genomic Variants (DGV)CD101 [DGVbeta]
DECIPHER (Syndromes)1:117544372-117579173  ENSG00000134256
CONAN: Copy Number AnalysisCD101 
Mutations
ICGC Data PortalCD101 
TCGA Data PortalCD101 
Broad Tumor PortalCD101
OASIS PortalCD101 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD101  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD101
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD101
DgiDB (Drug Gene Interaction Database)CD101
DoCM (Curated mutations)CD101 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD101 (select a term)
intoGenCD101
Cancer3DCD101(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604516   
Orphanet
MedgenCD101
Genetic Testing Registry CD101
NextProtQ93033 [Medical]
TSGene9398
GENETestsCD101
Huge Navigator CD101 [HugePedia]
snp3D : Map Gene to Disease9398
BioCentury BCIQCD101
ClinGenCD101
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9398
Chemical/Pharm GKB GenePA29762
Clinical trialCD101
Miscellaneous
canSAR (ICR)CD101 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD101
EVEXCD101
GoPubMedCD101
iHOPCD101
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:55:33 CEST 2017

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