Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CD163 (CD163 molecule)

Identity

Alias_namesCD163 antigen
Alias_symbol (synonym)M130
MM130
SCARI1
Other alias
HGNC (Hugo) CD163
LocusID (NCBI) 9332
Atlas_Id 50148
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 7470816 and ends at 7503818 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD163 (12p13.31) / A2ML1 (12p13.31)CD163 (12p13.31) / CD163 (12p13.31)PARG (10q11.23) / CD163 (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD163   1631
Cards
Entrez_Gene (NCBI)CD163  9332  CD163 molecule
AliasesM130; MM130; SCARI1
GeneCards (Weizmann)CD163
Ensembl hg19 (Hinxton)ENSG00000177575 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177575 [Gene_View]  chr12:7470816-7503818 [Contig_View]  CD163 [Vega]
ICGC DataPortalENSG00000177575
TCGA cBioPortalCD163
AceView (NCBI)CD163
Genatlas (Paris)CD163
WikiGenes9332
SOURCE (Princeton)CD163
Genetics Home Reference (NIH)CD163
Genomic and cartography
GoldenPath hg38 (UCSC)CD163  -     chr12:7470816-7503818 -  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD163  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblCD163 - 12p13.31 [CytoView hg19]  CD163 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBICD163 [Mapview hg19]  CD163 [Mapview hg38]
OMIM605545   
Gene and transcription
Genbank (Entrez)AA962842 AI128043 AI129762 AK226017 BC051281
RefSeq transcript (Entrez)NM_004244 NM_203416
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD163
Cluster EST : UnigeneHs.504641 [ NCBI ]
CGAP (NCI)Hs.504641
Alternative Splicing GalleryENSG00000177575
Gene ExpressionCD163 [ NCBI-GEO ]   CD163 [ EBI - ARRAY_EXPRESS ]   CD163 [ SEEK ]   CD163 [ MEM ]
Gene Expression Viewer (FireBrowse)CD163 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9332
GTEX Portal (Tissue expression)CD163
Human Protein AtlasENSG00000177575-CD163 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VB7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VB7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VB7
Splice isoforms : SwissVarQ86VB7
PhosPhoSitePlusQ86VB7
Domaine pattern : Prosite (Expaxy)SRCR_1 (PS00420)    SRCR_2 (PS50287)   
Domains : Interpro (EBI)SRCR    SRCR-like_dom   
Domain families : Pfam (Sanger)SRCR (PF00530)   
Domain families : Pfam (NCBI)pfam00530   
Domain families : Smart (EMBL)SR (SM00202)  
Conserved Domain (NCBI)CD163
DMDM Disease mutations9332
Blocks (Seattle)CD163
SuperfamilyQ86VB7
Human Protein Atlas [tissue]ENSG00000177575-CD163 [tissue]
Peptide AtlasQ86VB7
HPRD05708
IPIIPI00104074   IPI00759642   IPI00513892   IPI00953368   IPI01011248   IPI00759525   IPI01015426   IPI01009585   
Protein Interaction databases
DIP (DOE-UCLA)Q86VB7
IntAct (EBI)Q86VB7
FunCoupENSG00000177575
BioGRIDCD163
STRING (EMBL)CD163
ZODIACCD163
Ontologies - Pathways
QuickGOQ86VB7
Ontology : AmiGOscavenger receptor activity  protein binding  extracellular region  plasma membrane  plasma membrane  integral component of plasma membrane  receptor-mediated endocytosis  acute-phase response  external side of plasma membrane  endocytic vesicle membrane  
Ontology : EGO-EBIscavenger receptor activity  protein binding  extracellular region  plasma membrane  plasma membrane  integral component of plasma membrane  receptor-mediated endocytosis  acute-phase response  external side of plasma membrane  endocytic vesicle membrane  
NDEx NetworkCD163
Atlas of Cancer Signalling NetworkCD163
Wikipedia pathwaysCD163
Orthology - Evolution
OrthoDB9332
GeneTree (enSembl)ENSG00000177575
Phylogenetic Trees/Animal Genes : TreeFamCD163
HOVERGENQ86VB7
HOGENOMQ86VB7
Homologs : HomoloGeneCD163
Homology/Alignments : Family Browser (UCSC)CD163
Gene fusions - Rearrangements
Tumor Fusion PortalCD163
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD163 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD163
dbVarCD163
ClinVarCD163
1000_GenomesCD163 
Exome Variant ServerCD163
ExAC (Exome Aggregation Consortium)ENSG00000177575
GNOMAD BrowserENSG00000177575
Genetic variants : HAPMAP9332
Genomic Variants (DGV)CD163 [DGVbeta]
DECIPHERCD163 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD163 
Mutations
ICGC Data PortalCD163 
TCGA Data PortalCD163 
Broad Tumor PortalCD163
OASIS PortalCD163 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD163  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD163
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD163
DgiDB (Drug Gene Interaction Database)CD163
DoCM (Curated mutations)CD163 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD163 (select a term)
intoGenCD163
Cancer3DCD163(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605545   
Orphanet
DisGeNETCD163
MedgenCD163
Genetic Testing Registry CD163
NextProtQ86VB7 [Medical]
TSGene9332
GENETestsCD163
Target ValidationCD163
Huge Navigator CD163 [HugePedia]
snp3D : Map Gene to Disease9332
BioCentury BCIQCD163
ClinGenCD163
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9332
Chemical/Pharm GKB GenePA26190
Clinical trialCD163
Miscellaneous
canSAR (ICR)CD163 (select the gene name)
Probes
Litterature
PubMed190 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD163
EVEXCD163
GoPubMedCD163
iHOPCD163
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:06:38 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.