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CD163L1 (CD163 molecule like 1)

Identity

Alias_namesCD163 antigen-like 1
CD163 molecule-like 1
Alias_symbol (synonym)M160
CD163B
SCARI2
Other aliasWC1
HGNC (Hugo) CD163L1
LocusID (NCBI) 283316
Atlas_Id 61609
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 7354961 and ends at 7444185 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ING4 (12p13.31) / CD163L1 (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD163L1   30375
Cards
Entrez_Gene (NCBI)CD163L1  283316  CD163 molecule like 1
AliasesCD163B; M160; SCARI2; WC1
GeneCards (Weizmann)CD163L1
Ensembl hg19 (Hinxton)ENSG00000177675 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177675 [Gene_View]  chr12:7354961-7444185 [Contig_View]  CD163L1 [Vega]
ICGC DataPortalENSG00000177675
TCGA cBioPortalCD163L1
AceView (NCBI)CD163L1
Genatlas (Paris)CD163L1
WikiGenes283316
SOURCE (Princeton)CD163L1
Genetics Home Reference (NIH)CD163L1
Genomic and cartography
GoldenPath hg38 (UCSC)CD163L1  -     chr12:7354961-7444185 -  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD163L1  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblCD163L1 - 12p13.31 [CytoView hg19]  CD163L1 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBICD163L1 [Mapview hg19]  CD163L1 [Mapview hg38]
OMIM606079   
Gene and transcription
Genbank (Entrez)AF264014 AK058038 AK303372 BC104962 BC104964
RefSeq transcript (Entrez)NM_001297650 NM_174941
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD163L1
Cluster EST : UnigeneHs.631727 [ NCBI ]
CGAP (NCI)Hs.631727
Alternative Splicing GalleryENSG00000177675
Gene ExpressionCD163L1 [ NCBI-GEO ]   CD163L1 [ EBI - ARRAY_EXPRESS ]   CD163L1 [ SEEK ]   CD163L1 [ MEM ]
Gene Expression Viewer (FireBrowse)CD163L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283316
GTEX Portal (Tissue expression)CD163L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NR16   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NR16  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NR16
Splice isoforms : SwissVarQ9NR16
PhosPhoSitePlusQ9NR16
Domaine pattern : Prosite (Expaxy)SRCR_1 (PS00420)    SRCR_2 (PS50287)   
Domains : Interpro (EBI)SRCR    SRCR-like_dom   
Domain families : Pfam (Sanger)SRCR (PF00530)   
Domain families : Pfam (NCBI)pfam00530   
Domain families : Smart (EMBL)SR (SM00202)  
Conserved Domain (NCBI)CD163L1
DMDM Disease mutations283316
Blocks (Seattle)CD163L1
SuperfamilyQ9NR16
Human Protein AtlasENSG00000177675
Peptide AtlasQ9NR16
HPRD07301
IPIIPI00942499   IPI00658056   IPI00657946   IPI01012567   IPI00026975   IPI01009668   IPI01009125   
Protein Interaction databases
DIP (DOE-UCLA)Q9NR16
IntAct (EBI)Q9NR16
FunCoupENSG00000177675
BioGRIDCD163L1
STRING (EMBL)CD163L1
ZODIACCD163L1
Ontologies - Pathways
QuickGOQ9NR16
Ontology : AmiGOscavenger receptor activity  extracellular region  plasma membrane  receptor-mediated endocytosis  integral component of membrane  
Ontology : EGO-EBIscavenger receptor activity  extracellular region  plasma membrane  receptor-mediated endocytosis  integral component of membrane  
NDEx NetworkCD163L1
Atlas of Cancer Signalling NetworkCD163L1
Wikipedia pathwaysCD163L1
Orthology - Evolution
OrthoDB283316
GeneTree (enSembl)ENSG00000177675
Phylogenetic Trees/Animal Genes : TreeFamCD163L1
HOVERGENQ9NR16
HOGENOMQ9NR16
Homologs : HomoloGeneCD163L1
Homology/Alignments : Family Browser (UCSC)CD163L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD163L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD163L1
dbVarCD163L1
ClinVarCD163L1
1000_GenomesCD163L1 
Exome Variant ServerCD163L1
ExAC (Exome Aggregation Consortium)CD163L1 (select the gene name)
Genetic variants : HAPMAP283316
Genomic Variants (DGV)CD163L1 [DGVbeta]
DECIPHERCD163L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD163L1 
Mutations
ICGC Data PortalCD163L1 
TCGA Data PortalCD163L1 
Broad Tumor PortalCD163L1
OASIS PortalCD163L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD163L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD163L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD163L1
DgiDB (Drug Gene Interaction Database)CD163L1
DoCM (Curated mutations)CD163L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD163L1 (select a term)
intoGenCD163L1
Cancer3DCD163L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606079   
Orphanet
MedgenCD163L1
Genetic Testing Registry CD163L1
NextProtQ9NR16 [Medical]
TSGene283316
GENETestsCD163L1
Target ValidationCD163L1
Huge Navigator CD163L1 [HugePedia]
snp3D : Map Gene to Disease283316
BioCentury BCIQCD163L1
ClinGenCD163L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283316
Chemical/Pharm GKB GenePA142672145
Clinical trialCD163L1
Miscellaneous
canSAR (ICR)CD163L1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD163L1
EVEXCD163L1
GoPubMedCD163L1
iHOPCD163L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:50 CEST 2017

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