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CD164 (CD164 molecule)

Identity

Alias_namesautosomal dominant 66
Alias_symbol (synonym)MUC-24
MGC-24
DFNA66
Other aliasMGC-24v
endolyn
HGNC (Hugo) CD164
LocusID (NCBI) 8763
Atlas_Id 45919
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 109366514 and ends at 109382812 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD164 (6q21) / FAM168B (2q21.1)CD164 (6q21) / PNRC1 (6q15)CD164 (6q21) / SLC20A1 (2q13)
DEK (6p22.3) / CD164 (6q21)LOC100302640 () / CD164 (6q21)RPL23 (17q12) / CD164 (6q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD164   1632
Cards
Entrez_Gene (NCBI)CD164  8763  CD164 molecule
AliasesDFNA66; MGC-24; MGC-24v; MUC-24; 
endolyn
GeneCards (Weizmann)CD164
Ensembl hg19 (Hinxton)ENSG00000135535 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135535 [Gene_View]  chr6:109366514-109382812 [Contig_View]  CD164 [Vega]
ICGC DataPortalENSG00000135535
TCGA cBioPortalCD164
AceView (NCBI)CD164
Genatlas (Paris)CD164
WikiGenes8763
SOURCE (Princeton)CD164
Genetics Home Reference (NIH)CD164
Genomic and cartography
GoldenPath hg38 (UCSC)CD164  -     chr6:109366514-109382812 -  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD164  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblCD164 - 6q21 [CytoView hg19]  CD164 - 6q21 [CytoView hg38]
Mapping of homologs : NCBICD164 [Mapview hg19]  CD164 [Mapview hg38]
OMIM603356   616969   
Gene and transcription
Genbank (Entrez)AF106518 AF263279 AF299341 AF299342 AF299343
RefSeq transcript (Entrez)NM_001142401 NM_001142402 NM_001142403 NM_001142404 NM_001346500 NM_006016
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD164
Cluster EST : UnigeneHs.520313 [ NCBI ]
CGAP (NCI)Hs.520313
Alternative Splicing GalleryENSG00000135535
Gene ExpressionCD164 [ NCBI-GEO ]   CD164 [ EBI - ARRAY_EXPRESS ]   CD164 [ SEEK ]   CD164 [ MEM ]
Gene Expression Viewer (FireBrowse)CD164 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8763
GTEX Portal (Tissue expression)CD164
Human Protein AtlasENSG00000135535-CD164 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ04900   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ04900  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ04900
Splice isoforms : SwissVarQ04900
PhosPhoSitePlusQ04900
Domains : Interpro (EBI)CD164_MGC24   
Domain families : Pfam (Sanger)MGC-24 (PF05283)   
Domain families : Pfam (NCBI)pfam05283   
Conserved Domain (NCBI)CD164
DMDM Disease mutations8763
Blocks (Seattle)CD164
SuperfamilyQ04900
Human Protein Atlas [tissue]ENSG00000135535-CD164 [tissue]
Peptide AtlasQ04900
HPRD04523
IPIIPI00183465   IPI00030241   IPI00165167   IPI00163902   IPI00909137   IPI00909553   IPI00552230   IPI00964329   
Protein Interaction databases
DIP (DOE-UCLA)Q04900
IntAct (EBI)Q04900
FunCoupENSG00000135535
BioGRIDCD164
STRING (EMBL)CD164
ZODIACCD164
Ontologies - Pathways
QuickGOQ04900
Ontology : AmiGOprotein binding  extracellular region  lysosome  lysosomal membrane  endosome  plasma membrane  integral component of plasma membrane  immune response  cell adhesion  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  negative regulation of cell adhesion  signal transduction  multicellular organism development  muscle organ development  negative regulation of cell proliferation  endosome membrane  hemopoiesis  
Ontology : EGO-EBIprotein binding  extracellular region  lysosome  lysosomal membrane  endosome  plasma membrane  integral component of plasma membrane  immune response  cell adhesion  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  negative regulation of cell adhesion  signal transduction  multicellular organism development  muscle organ development  negative regulation of cell proliferation  endosome membrane  hemopoiesis  
Pathways : KEGGLysosome   
NDEx NetworkCD164
Atlas of Cancer Signalling NetworkCD164
Wikipedia pathwaysCD164
Orthology - Evolution
OrthoDB8763
GeneTree (enSembl)ENSG00000135535
Phylogenetic Trees/Animal Genes : TreeFamCD164
HOVERGENQ04900
HOGENOMQ04900
Homologs : HomoloGeneCD164
Homology/Alignments : Family Browser (UCSC)CD164
Gene fusions - Rearrangements
Fusion: Tumor Portal CD164
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD164 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD164
dbVarCD164
ClinVarCD164
1000_GenomesCD164 
Exome Variant ServerCD164
ExAC (Exome Aggregation Consortium)ENSG00000135535
GNOMAD BrowserENSG00000135535
Genetic variants : HAPMAP8763
Genomic Variants (DGV)CD164 [DGVbeta]
DECIPHERCD164 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD164 
Mutations
ICGC Data PortalCD164 
TCGA Data PortalCD164 
Broad Tumor PortalCD164
OASIS PortalCD164 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD164  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD164
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD164
DgiDB (Drug Gene Interaction Database)CD164
DoCM (Curated mutations)CD164 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD164 (select a term)
intoGenCD164
Cancer3DCD164(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603356    616969   
Orphanet12046   
MedgenCD164
Genetic Testing Registry CD164
NextProtQ04900 [Medical]
TSGene8763
GENETestsCD164
Target ValidationCD164
Huge Navigator CD164 [HugePedia]
snp3D : Map Gene to Disease8763
BioCentury BCIQCD164
ClinGenCD164
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8763
Chemical/Pharm GKB GenePA26191
Clinical trialCD164
Miscellaneous
canSAR (ICR)CD164 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD164
EVEXCD164
GoPubMedCD164
iHOPCD164
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:43:42 CET 2017

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