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CD164L2 (CD164 molecule like 2)

Identity

Alias_namesCD164 sialomucin-like 2
Other aliasEAPG6122
UNQ6122
HGNC (Hugo) CD164L2
LocusID (NCBI) 388611
Atlas_Id 61610
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 27379176 and ends at 27383333 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD164L2   32043
Cards
Entrez_Gene (NCBI)CD164L2  388611  CD164 molecule like 2
AliasesEAPG6122; UNQ6122
GeneCards (Weizmann)CD164L2
Ensembl hg19 (Hinxton)ENSG00000174950 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174950 [Gene_View]  chr1:27379176-27383333 [Contig_View]  CD164L2 [Vega]
ICGC DataPortalENSG00000174950
TCGA cBioPortalCD164L2
AceView (NCBI)CD164L2
Genatlas (Paris)CD164L2
WikiGenes388611
SOURCE (Princeton)CD164L2
Genetics Home Reference (NIH)CD164L2
Genomic and cartography
GoldenPath hg38 (UCSC)CD164L2  -     chr1:27379176-27383333 -  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD164L2  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblCD164L2 - 1p36.11 [CytoView hg19]  CD164L2 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBICD164L2 [Mapview hg19]  CD164L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY358761 BC137466 BM145906 BM145910 DB114521
RefSeq transcript (Entrez)NM_001330448 NM_207397
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD164L2
Cluster EST : UnigeneHs.664836 [ NCBI ]
CGAP (NCI)Hs.664836
Alternative Splicing GalleryENSG00000174950
Gene ExpressionCD164L2 [ NCBI-GEO ]   CD164L2 [ EBI - ARRAY_EXPRESS ]   CD164L2 [ SEEK ]   CD164L2 [ MEM ]
Gene Expression Viewer (FireBrowse)CD164L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388611
GTEX Portal (Tissue expression)CD164L2
Human Protein AtlasENSG00000174950-CD164L2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWJ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWJ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWJ8
Splice isoforms : SwissVarQ6UWJ8
PhosPhoSitePlusQ6UWJ8
Domains : Interpro (EBI)CD164_MGC24   
Domain families : Pfam (Sanger)MGC-24 (PF05283)   
Domain families : Pfam (NCBI)pfam05283   
Conserved Domain (NCBI)CD164L2
DMDM Disease mutations388611
Blocks (Seattle)CD164L2
SuperfamilyQ6UWJ8
Human Protein Atlas [tissue]ENSG00000174950-CD164L2 [tissue]
Peptide AtlasQ6UWJ8
HPRD15619
IPIIPI00397758   IPI00645532   IPI00552461   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWJ8
IntAct (EBI)Q6UWJ8
FunCoupENSG00000174950
BioGRIDCD164L2
STRING (EMBL)CD164L2
ZODIACCD164L2
Ontologies - Pathways
QuickGOQ6UWJ8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkCD164L2
Atlas of Cancer Signalling NetworkCD164L2
Wikipedia pathwaysCD164L2
Orthology - Evolution
OrthoDB388611
GeneTree (enSembl)ENSG00000174950
Phylogenetic Trees/Animal Genes : TreeFamCD164L2
HOVERGENQ6UWJ8
HOGENOMQ6UWJ8
Homologs : HomoloGeneCD164L2
Homology/Alignments : Family Browser (UCSC)CD164L2
Gene fusions - Rearrangements
Fusion: Tumor Portal CD164L2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD164L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD164L2
dbVarCD164L2
ClinVarCD164L2
1000_GenomesCD164L2 
Exome Variant ServerCD164L2
ExAC (Exome Aggregation Consortium)ENSG00000174950
GNOMAD BrowserENSG00000174950
Genetic variants : HAPMAP388611
Genomic Variants (DGV)CD164L2 [DGVbeta]
DECIPHERCD164L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD164L2 
Mutations
ICGC Data PortalCD164L2 
TCGA Data PortalCD164L2 
Broad Tumor PortalCD164L2
OASIS PortalCD164L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD164L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD164L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD164L2
DgiDB (Drug Gene Interaction Database)CD164L2
DoCM (Curated mutations)CD164L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD164L2 (select a term)
intoGenCD164L2
Cancer3DCD164L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCD164L2
Genetic Testing Registry CD164L2
NextProtQ6UWJ8 [Medical]
TSGene388611
GENETestsCD164L2
Target ValidationCD164L2
Huge Navigator CD164L2 [HugePedia]
snp3D : Map Gene to Disease388611
BioCentury BCIQCD164L2
ClinGenCD164L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388611
Chemical/Pharm GKB GenePA142672146
Clinical trialCD164L2
Miscellaneous
canSAR (ICR)CD164L2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD164L2
EVEXCD164L2
GoPubMedCD164L2
iHOPCD164L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:41:58 CET 2017

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