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CD177 (CD177 molecule)

Identity

Alias_namesCD177 antigen
Alias_symbol (synonym)PRV1
HNA2A
NB1
Other aliasHNA-2a
NB1 GP
PRV-1
HGNC (Hugo) CD177
LocusID (NCBI) 57126
Atlas_Id 54964
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43857811 and ends at 43867324 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF709 (19p13.2) / CD177 (19q13.31)ZNF709 19p13.2 / CD177 19q13.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD177   30072
Cards
Entrez_Gene (NCBI)CD177  57126  CD177 molecule
AliasesHNA-2a; HNA2A; NB1; NB1; 
PRV-1; PRV1
GeneCards (Weizmann)CD177
Ensembl hg19 (Hinxton)ENSG00000204936 [Gene_View]  chr19:43857811-43867324 [Contig_View]  CD177 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204936 [Gene_View]  chr19:43857811-43867324 [Contig_View]  CD177 [Vega]
ICGC DataPortalENSG00000204936
TCGA cBioPortalCD177
AceView (NCBI)CD177
Genatlas (Paris)CD177
WikiGenes57126
SOURCE (Princeton)CD177
Genetics Home Reference (NIH)CD177
Genomic and cartography
GoldenPath hg19 (UCSC)CD177  -     chr19:43857811-43867324 +  19q13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CD177  -     19q13.31   [Description]    (hg38-Dec_2013)
EnsemblCD177 - 19q13.31 [CytoView hg19]  CD177 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBICD177 [Mapview hg19]  CD177 [Mapview hg38]
OMIM162860   
Gene and transcription
Genbank (Entrez)AB237911 AF146747 AJ290452 AJ305326 AJ310433
RefSeq transcript (Entrez)NM_020406
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)CD177
Cluster EST : UnigeneHs.232165 [ NCBI ]
CGAP (NCI)Hs.232165
Alternative Splicing GalleryENSG00000204936
Gene ExpressionCD177 [ NCBI-GEO ]   CD177 [ EBI - ARRAY_EXPRESS ]   CD177 [ SEEK ]   CD177 [ MEM ]
Gene Expression Viewer (FireBrowse)CD177 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57126
GTEX Portal (Tissue expression)CD177
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6Q3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6Q3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6Q3
Splice isoforms : SwissVarQ8N6Q3
PhosPhoSitePlusQ8N6Q3
Domains : Interpro (EBI)LY6_UPAR   
Domain families : Pfam (Sanger)UPAR_LY6 (PF00021)   
Domain families : Pfam (NCBI)pfam00021   
Conserved Domain (NCBI)CD177
DMDM Disease mutations57126
Blocks (Seattle)CD177
SuperfamilyQ8N6Q3
Human Protein AtlasENSG00000204936
Peptide AtlasQ8N6Q3
HPRD01222
IPIIPI00297444   IPI00740984   IPI00736058   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6Q3
IntAct (EBI)Q8N6Q3
FunCoupENSG00000204936
BioGRIDCD177
STRING (EMBL)CD177
ZODIACCD177
Ontologies - Pathways
QuickGOQ8N6Q3
Ontology : AmiGOprotein binding  plasma membrane  blood coagulation  anchored component of membrane  leukocyte migration  extracellular exosome  
Ontology : EGO-EBIprotein binding  plasma membrane  blood coagulation  anchored component of membrane  leukocyte migration  extracellular exosome  
NDEx NetworkCD177
Atlas of Cancer Signalling NetworkCD177
Wikipedia pathwaysCD177
Orthology - Evolution
OrthoDB57126
GeneTree (enSembl)ENSG00000204936
Phylogenetic Trees/Animal Genes : TreeFamCD177
HOVERGENQ8N6Q3
HOGENOMQ8N6Q3
Homologs : HomoloGeneCD177
Homology/Alignments : Family Browser (UCSC)CD177
Gene fusions - Rearrangements
Fusion : MitelmanZNF709/CD177 [19p13.2/19q13.31]  [t(19;19)(p13;q13)]  
Fusion: TCGAZNF709 19p13.2 CD177 19q13.31 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD177 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD177
dbVarCD177
ClinVarCD177
1000_GenomesCD177 
Exome Variant ServerCD177
ExAC (Exome Aggregation Consortium)CD177 (select the gene name)
Genetic variants : HAPMAP57126
Genomic Variants (DGV)CD177 [DGVbeta]
DECIPHER (Syndromes)19:43857811-43867324  ENSG00000204936
CONAN: Copy Number AnalysisCD177 
Mutations
ICGC Data PortalCD177 
TCGA Data PortalCD177 
Broad Tumor PortalCD177
OASIS PortalCD177 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD177  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD177
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD177
DgiDB (Drug Gene Interaction Database)CD177
DoCM (Curated mutations)CD177 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD177 (select a term)
intoGenCD177
Cancer3DCD177(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM162860   
Orphanet
MedgenCD177
Genetic Testing Registry CD177
NextProtQ8N6Q3 [Medical]
TSGene57126
GENETestsCD177
Huge Navigator CD177 [HugePedia]
snp3D : Map Gene to Disease57126
BioCentury BCIQCD177
ClinGenCD177
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57126
Chemical/Pharm GKB GenePA142672147
Clinical trialCD177
Miscellaneous
canSAR (ICR)CD177 (select the gene name)
Probes
Litterature
PubMed68 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD177
EVEXCD177
GoPubMedCD177
iHOPCD177
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:59:19 CET 2017

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