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CD180 (CD180 molecule)

Identity

Alias_namesLY64
lymphocyte antigen 64 (mouse) homolog, radioprotective, 105kD
CD180 antigen
Alias_symbol (synonym)RP105
Ly78
Other alias
HGNC (Hugo) CD180
LocusID (NCBI) 4064
Atlas_Id 41219
Location 5q12.3  [Link to chromosome band 5q12]
Location_base_pair Starts at 66478104 and ends at 66492617 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CD180 (5q12.3) / CCDC149 (4p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD180   6726
Cards
Entrez_Gene (NCBI)CD180  4064  CD180 molecule
AliasesLY64; Ly78; RP105
GeneCards (Weizmann)CD180
Ensembl hg19 (Hinxton)ENSG00000134061 [Gene_View]  chr5:66478104-66492617 [Contig_View]  CD180 [Vega]
Ensembl hg38 (Hinxton)ENSG00000134061 [Gene_View]  chr5:66478104-66492617 [Contig_View]  CD180 [Vega]
ICGC DataPortalENSG00000134061
TCGA cBioPortalCD180
AceView (NCBI)CD180
Genatlas (Paris)CD180
WikiGenes4064
SOURCE (Princeton)CD180
Genetics Home Reference (NIH)CD180
Genomic and cartography
GoldenPath hg19 (UCSC)CD180  -     chr5:66478104-66492617 -  5q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CD180  -     5q12.3   [Description]    (hg38-Dec_2013)
EnsemblCD180 - 5q12.3 [CytoView hg19]  CD180 - 5q12.3 [CytoView hg38]
Mapping of homologs : NCBICD180 [Mapview hg19]  CD180 [Mapview hg38]
OMIM602226   
Gene and transcription
Genbank (Entrez)AK313177 AL544501 AL570708 AW512119 BC109069
RefSeq transcript (Entrez)NM_005582
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)CD180
Cluster EST : UnigeneHs.87205 [ NCBI ]
CGAP (NCI)Hs.87205
Alternative Splicing GalleryENSG00000134061
Gene ExpressionCD180 [ NCBI-GEO ]   CD180 [ EBI - ARRAY_EXPRESS ]   CD180 [ SEEK ]   CD180 [ MEM ]
Gene Expression Viewer (FireBrowse)CD180 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4064
GTEX Portal (Tissue expression)CD180
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99467   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99467  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99467
Splice isoforms : SwissVarQ99467
PhosPhoSitePlusQ99467
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    L_dom-like    Leu-rich_rpt   
Domain families : Pfam (Sanger)LRR_1 (PF00560)    LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam00560    pfam13855   
Domain families : Smart (EMBL)LRRCT (SM00082)  
Conserved Domain (NCBI)CD180
DMDM Disease mutations4064
Blocks (Seattle)CD180
PDB (SRS)3B2D   
PDB (PDBSum)3B2D   
PDB (IMB)3B2D   
PDB (RSDB)3B2D   
Structural Biology KnowledgeBase3B2D   
SCOP (Structural Classification of Proteins)3B2D   
CATH (Classification of proteins structures)3B2D   
SuperfamilyQ99467
Human Protein AtlasENSG00000134061
Peptide AtlasQ99467
HPRD03749
IPIIPI00023722   
Protein Interaction databases
DIP (DOE-UCLA)Q99467
IntAct (EBI)Q99467
FunCoupENSG00000134061
BioGRIDCD180
STRING (EMBL)CD180
ZODIACCD180
Ontologies - Pathways
QuickGOQ99467
Ontology : AmiGOtoll-like receptor signaling pathway  B cell proliferation involved in immune response  receptor activity  integral component of plasma membrane  inflammatory response  positive regulation of lipopolysaccharide-mediated signaling pathway  innate immune response  cellular response to lipopolysaccharide  
Ontology : EGO-EBItoll-like receptor signaling pathway  B cell proliferation involved in immune response  receptor activity  integral component of plasma membrane  inflammatory response  positive regulation of lipopolysaccharide-mediated signaling pathway  innate immune response  cellular response to lipopolysaccharide  
NDEx NetworkCD180
Atlas of Cancer Signalling NetworkCD180
Wikipedia pathwaysCD180
Orthology - Evolution
OrthoDB4064
GeneTree (enSembl)ENSG00000134061
Phylogenetic Trees/Animal Genes : TreeFamCD180
HOVERGENQ99467
HOGENOMQ99467
Homologs : HomoloGeneCD180
Homology/Alignments : Family Browser (UCSC)CD180
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD180 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD180
dbVarCD180
ClinVarCD180
1000_GenomesCD180 
Exome Variant ServerCD180
ExAC (Exome Aggregation Consortium)CD180 (select the gene name)
Genetic variants : HAPMAP4064
Genomic Variants (DGV)CD180 [DGVbeta]
DECIPHER (Syndromes)5:66478104-66492617  ENSG00000134061
CONAN: Copy Number AnalysisCD180 
Mutations
ICGC Data PortalCD180 
TCGA Data PortalCD180 
Broad Tumor PortalCD180
OASIS PortalCD180 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD180  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD180
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD180
DgiDB (Drug Gene Interaction Database)CD180
DoCM (Curated mutations)CD180 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD180 (select a term)
intoGenCD180
Cancer3DCD180(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602226   
Orphanet
MedgenCD180
Genetic Testing Registry CD180
NextProtQ99467 [Medical]
TSGene4064
GENETestsCD180
Huge Navigator CD180 [HugePedia]
snp3D : Map Gene to Disease4064
BioCentury BCIQCD180
ClinGenCD180
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4064
Chemical/Pharm GKB GenePA30490
Clinical trialCD180
Miscellaneous
canSAR (ICR)CD180 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD180
EVEXCD180
GoPubMedCD180
iHOPCD180
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:55:35 CEST 2017

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