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CD1A (CD1a molecule)

Identity

Alias_namesCD1
CD1A antigen, a polypeptide
CD1a antigen
Other aliasFCB6
HTA1
R4
T6
HGNC (Hugo) CD1A
LocusID (NCBI) 909
Atlas_Id 45832
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 158248329 and ends at 158258268 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLAMF1 (1q23.3) / CD1A (1q23.1)SLAMF1 1q23.3 / CD1A 1q23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD1A   1634
Cards
Entrez_Gene (NCBI)CD1A  909  CD1a molecule
AliasesCD1; FCB6; HTA1; R4; 
T6
GeneCards (Weizmann)CD1A
Ensembl hg19 (Hinxton)ENSG00000158477 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158477 [Gene_View]  chr1:158248329-158258268 [Contig_View]  CD1A [Vega]
ICGC DataPortalENSG00000158477
TCGA cBioPortalCD1A
AceView (NCBI)CD1A
Genatlas (Paris)CD1A
WikiGenes909
SOURCE (Princeton)CD1A
Genetics Home Reference (NIH)CD1A
Genomic and cartography
GoldenPath hg38 (UCSC)CD1A  -     chr1:158248329-158258268 +  1q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD1A  -     1q23.1   [Description]    (hg19-Feb_2009)
EnsemblCD1A - 1q23.1 [CytoView hg19]  CD1A - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBICD1A [Mapview hg19]  CD1A [Mapview hg38]
OMIM188370   
Gene and transcription
Genbank (Entrez)AK312945 AW949640 BC031645 CA432941 DA822513
RefSeq transcript (Entrez)NM_001320652 NM_001763
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD1A
Cluster EST : UnigeneHs.1309 [ NCBI ]
CGAP (NCI)Hs.1309
Alternative Splicing GalleryENSG00000158477
Gene ExpressionCD1A [ NCBI-GEO ]   CD1A [ EBI - ARRAY_EXPRESS ]   CD1A [ SEEK ]   CD1A [ MEM ]
Gene Expression Viewer (FireBrowse)CD1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)909
GTEX Portal (Tissue expression)CD1A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP06126   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP06126  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP06126
Splice isoforms : SwissVarP06126
PhosPhoSitePlusP06126
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_C1-set    MHC_I-like_Ag-recog    MHC_I/II-like_Ag-recog   
Domain families : Pfam (Sanger)C1-set (PF07654)    MHC_I_3 (PF16497)   
Domain families : Pfam (NCBI)pfam07654    pfam16497   
Domain families : Smart (EMBL)IGc1 (SM00407)  
Conserved Domain (NCBI)CD1A
DMDM Disease mutations909
Blocks (Seattle)CD1A
PDB (SRS)1ONQ    1XZ0    4X6C    4X6D    4X6E    4X6F    5J1A   
PDB (PDBSum)1ONQ    1XZ0    4X6C    4X6D    4X6E    4X6F    5J1A   
PDB (IMB)1ONQ    1XZ0    4X6C    4X6D    4X6E    4X6F    5J1A   
PDB (RSDB)1ONQ    1XZ0    4X6C    4X6D    4X6E    4X6F    5J1A   
Structural Biology KnowledgeBase1ONQ    1XZ0    4X6C    4X6D    4X6E    4X6F    5J1A   
SCOP (Structural Classification of Proteins)1ONQ    1XZ0    4X6C    4X6D    4X6E    4X6F    5J1A   
CATH (Classification of proteins structures)1ONQ    1XZ0    4X6C    4X6D    4X6E    4X6F    5J1A   
SuperfamilyP06126
Human Protein AtlasENSG00000158477
Peptide AtlasP06126
HPRD01776
IPIIPI00025382   
Protein Interaction databases
DIP (DOE-UCLA)P06126
IntAct (EBI)P06126
FunCoupENSG00000158477
BioGRIDCD1A
STRING (EMBL)CD1A
ZODIACCD1A
Ontologies - Pathways
QuickGOP06126
Ontology : AmiGOadaptive immune response  protein binding  plasma membrane  plasma membrane  integral component of plasma membrane  immune response  endosome membrane  beta-2-microglobulin binding  endogenous lipid antigen binding  exogenous lipid antigen binding  membrane raft  antigen processing and presentation, exogenous lipid antigen via MHC class Ib  regulation of immune response  lipopeptide binding  
Ontology : EGO-EBIadaptive immune response  protein binding  plasma membrane  plasma membrane  integral component of plasma membrane  immune response  endosome membrane  beta-2-microglobulin binding  endogenous lipid antigen binding  exogenous lipid antigen binding  membrane raft  antigen processing and presentation, exogenous lipid antigen via MHC class Ib  regulation of immune response  lipopeptide binding  
Pathways : KEGGHematopoietic cell lineage   
NDEx NetworkCD1A
Atlas of Cancer Signalling NetworkCD1A
Wikipedia pathwaysCD1A
Orthology - Evolution
OrthoDB909
GeneTree (enSembl)ENSG00000158477
Phylogenetic Trees/Animal Genes : TreeFamCD1A
HOVERGENP06126
HOGENOMP06126
Homologs : HomoloGeneCD1A
Homology/Alignments : Family Browser (UCSC)CD1A
Gene fusions - Rearrangements
Fusion : MitelmanSLAMF1/CD1A [1q23.3/1q23.1]  [t(1;1)(q23;q23)]  
Fusion: TCGASLAMF1 1q23.3 CD1A 1q23.1 LUAD THCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD1A
dbVarCD1A
ClinVarCD1A
1000_GenomesCD1A 
Exome Variant ServerCD1A
ExAC (Exome Aggregation Consortium)CD1A (select the gene name)
Genetic variants : HAPMAP909
Genomic Variants (DGV)CD1A [DGVbeta]
DECIPHERCD1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD1A 
Mutations
ICGC Data PortalCD1A 
TCGA Data PortalCD1A 
Broad Tumor PortalCD1A
OASIS PortalCD1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD1A
DgiDB (Drug Gene Interaction Database)CD1A
DoCM (Curated mutations)CD1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD1A (select a term)
intoGenCD1A
Cancer3DCD1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM188370   
Orphanet
MedgenCD1A
Genetic Testing Registry CD1A
NextProtP06126 [Medical]
TSGene909
GENETestsCD1A
Target ValidationCD1A
Huge Navigator CD1A [HugePedia]
snp3D : Map Gene to Disease909
BioCentury BCIQCD1A
ClinGenCD1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD909
Chemical/Pharm GKB GenePA26193
Clinical trialCD1A
Miscellaneous
canSAR (ICR)CD1A (select the gene name)
Probes
Litterature
PubMed91 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD1A
EVEXCD1A
GoPubMedCD1A
iHOPCD1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:49:09 CEST 2017

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