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CD1B (CD1b molecule)

Identity

Alias_namesCD1
CD1B antigen, b polypeptide
CD1b antigen
Other aliasCD1A
R1
HGNC (Hugo) CD1B
LocusID (NCBI) 910
Atlas_Id 55986
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 158297740 and ends at 158301321 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD1B   1635
Cards
Entrez_Gene (NCBI)CD1B  910  CD1b molecule
AliasesCD1; CD1A; R1
GeneCards (Weizmann)CD1B
Ensembl hg19 (Hinxton)ENSG00000158485 [Gene_View]  chr1:158297740-158301321 [Contig_View]  CD1B [Vega]
Ensembl hg38 (Hinxton)ENSG00000158485 [Gene_View]  chr1:158297740-158301321 [Contig_View]  CD1B [Vega]
ICGC DataPortalENSG00000158485
TCGA cBioPortalCD1B
AceView (NCBI)CD1B
Genatlas (Paris)CD1B
WikiGenes910
SOURCE (Princeton)CD1B
Genetics Home Reference (NIH)CD1B
Genomic and cartography
GoldenPath hg19 (UCSC)CD1B  -     chr1:158297740-158301321 -  1q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CD1B  -     1q23.1   [Description]    (hg38-Dec_2013)
EnsemblCD1B - 1q23.1 [CytoView hg19]  CD1B - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBICD1B [Mapview hg19]  CD1B [Mapview hg38]
OMIM188360   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001764
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD1B
Cluster EST : UnigeneHs.1310 [ NCBI ]
CGAP (NCI)Hs.1310
Alternative Splicing GalleryENSG00000158485
Gene ExpressionCD1B [ NCBI-GEO ]   CD1B [ EBI - ARRAY_EXPRESS ]   CD1B [ SEEK ]   CD1B [ MEM ]
Gene Expression Viewer (FireBrowse)CD1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)910
GTEX Portal (Tissue expression)CD1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP29016   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP29016  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP29016
Splice isoforms : SwissVarP29016
PhosPhoSitePlusP29016
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_C1-set    MHC_I-like_Ag-recog    MHC_I/II-like_Ag-recog   
Domain families : Pfam (Sanger)C1-set (PF07654)    MHC_I_3 (PF16497)   
Domain families : Pfam (NCBI)pfam07654    pfam16497   
Domain families : Smart (EMBL)IGc1 (SM00407)  
Conserved Domain (NCBI)CD1B
DMDM Disease mutations910
Blocks (Seattle)CD1B
PDB (SRS)1GZP    1GZQ    1UQS    2H26    3OV6    3T8X    4ONO    5C9J   
PDB (PDBSum)1GZP    1GZQ    1UQS    2H26    3OV6    3T8X    4ONO    5C9J   
PDB (IMB)1GZP    1GZQ    1UQS    2H26    3OV6    3T8X    4ONO    5C9J   
PDB (RSDB)1GZP    1GZQ    1UQS    2H26    3OV6    3T8X    4ONO    5C9J   
Structural Biology KnowledgeBase1GZP    1GZQ    1UQS    2H26    3OV6    3T8X    4ONO    5C9J   
SCOP (Structural Classification of Proteins)1GZP    1GZQ    1UQS    2H26    3OV6    3T8X    4ONO    5C9J   
CATH (Classification of proteins structures)1GZP    1GZQ    1UQS    2H26    3OV6    3T8X    4ONO    5C9J   
SuperfamilyP29016
Human Protein AtlasENSG00000158485
Peptide AtlasP29016
HPRD01775
IPIIPI00019849   IPI00513798   
Protein Interaction databases
DIP (DOE-UCLA)P29016
IntAct (EBI)P29016
FunCoupENSG00000158485
BioGRIDCD1B
STRING (EMBL)CD1B
ZODIACCD1B
Ontologies - Pathways
QuickGOP29016
Ontology : AmiGOadaptive immune response  protein binding  lysosomal membrane  plasma membrane  cell surface  endosome membrane  integral component of membrane  beta-2-microglobulin binding  endogenous lipid antigen binding  exogenous lipid antigen binding  antigen processing and presentation, exogenous lipid antigen via MHC class Ib  regulation of immune response  lipopeptide binding  
Ontology : EGO-EBIadaptive immune response  protein binding  lysosomal membrane  plasma membrane  cell surface  endosome membrane  integral component of membrane  beta-2-microglobulin binding  endogenous lipid antigen binding  exogenous lipid antigen binding  antigen processing and presentation, exogenous lipid antigen via MHC class Ib  regulation of immune response  lipopeptide binding  
Pathways : KEGGHematopoietic cell lineage   
NDEx NetworkCD1B
Atlas of Cancer Signalling NetworkCD1B
Wikipedia pathwaysCD1B
Orthology - Evolution
OrthoDB910
GeneTree (enSembl)ENSG00000158485
Phylogenetic Trees/Animal Genes : TreeFamCD1B
HOVERGENP29016
HOGENOMP29016
Homologs : HomoloGeneCD1B
Homology/Alignments : Family Browser (UCSC)CD1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD1B
dbVarCD1B
ClinVarCD1B
1000_GenomesCD1B 
Exome Variant ServerCD1B
ExAC (Exome Aggregation Consortium)CD1B (select the gene name)
Genetic variants : HAPMAP910
Genomic Variants (DGV)CD1B [DGVbeta]
DECIPHER (Syndromes)1:158297740-158301321  ENSG00000158485
CONAN: Copy Number AnalysisCD1B 
Mutations
ICGC Data PortalCD1B 
TCGA Data PortalCD1B 
Broad Tumor PortalCD1B
OASIS PortalCD1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD1B
DgiDB (Drug Gene Interaction Database)CD1B
DoCM (Curated mutations)CD1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD1B (select a term)
intoGenCD1B
Cancer3DCD1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM188360   
Orphanet
MedgenCD1B
Genetic Testing Registry CD1B
NextProtP29016 [Medical]
TSGene910
GENETestsCD1B
Huge Navigator CD1B [HugePedia]
snp3D : Map Gene to Disease910
BioCentury BCIQCD1B
ClinGenCD1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD910
Chemical/Pharm GKB GenePA26194
Clinical trialCD1B
Miscellaneous
canSAR (ICR)CD1B (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD1B
EVEXCD1B
GoPubMedCD1B
iHOPCD1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:55:35 CEST 2017

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