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CD1D (CD1d molecule)

Identity

Alias_namesCD1D antigen, d polypeptide
CD1d antigen
Other aliasCD1A
R3
R3G1
HGNC (Hugo) CD1D
LocusID (NCBI) 912
Atlas_Id 970
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 158179947 and ends at 158184896 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD1D   1637
Cards
Entrez_Gene (NCBI)CD1D  912  CD1d molecule
AliasesCD1A; R3; R3G1
GeneCards (Weizmann)CD1D
Ensembl hg19 (Hinxton)ENSG00000158473 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158473 [Gene_View]  chr1:158179947-158184896 [Contig_View]  CD1D [Vega]
ICGC DataPortalENSG00000158473
TCGA cBioPortalCD1D
AceView (NCBI)CD1D
Genatlas (Paris)CD1D
WikiGenes912
SOURCE (Princeton)CD1D
Genetics Home Reference (NIH)CD1D
Genomic and cartography
GoldenPath hg38 (UCSC)CD1D  -     chr1:158179947-158184896 +  1q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD1D  -     1q23.1   [Description]    (hg19-Feb_2009)
EnsemblCD1D - 1q23.1 [CytoView hg19]  CD1D - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBICD1D [Mapview hg19]  CD1D [Mapview hg38]
OMIM188410   
Gene and transcription
Genbank (Entrez)AK225996 AK310541 AK310749 BC027926 BX106524
RefSeq transcript (Entrez)NM_001319145 NM_001766
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD1D
Cluster EST : UnigeneHs.731511 [ NCBI ]
CGAP (NCI)Hs.731511
Alternative Splicing GalleryENSG00000158473
Gene ExpressionCD1D [ NCBI-GEO ]   CD1D [ EBI - ARRAY_EXPRESS ]   CD1D [ SEEK ]   CD1D [ MEM ]
Gene Expression Viewer (FireBrowse)CD1D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)912
GTEX Portal (Tissue expression)CD1D
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15813   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP15813  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP15813
Splice isoforms : SwissVarP15813
PhosPhoSitePlusP15813
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_C1-set    MHC_I-like_Ag-recog    MHC_I/II-like_Ag-recog   
Domain families : Pfam (Sanger)C1-set (PF07654)    MHC_I_3 (PF16497)   
Domain families : Pfam (NCBI)pfam07654    pfam16497   
Domain families : Smart (EMBL)IGc1 (SM00407)  
Conserved Domain (NCBI)CD1D
DMDM Disease mutations912
Blocks (Seattle)CD1D
PDB (SRS)1ZT4    2PO6    3HUJ    3SDX    3TZV    3U0P    3VWJ    3VWK    4EN3    4LHU    4MNG    4MQ7    4WO4    4WW2    4WWK   
PDB (PDBSum)1ZT4    2PO6    3HUJ    3SDX    3TZV    3U0P    3VWJ    3VWK    4EN3    4LHU    4MNG    4MQ7    4WO4    4WW2    4WWK   
PDB (IMB)1ZT4    2PO6    3HUJ    3SDX    3TZV    3U0P    3VWJ    3VWK    4EN3    4LHU    4MNG    4MQ7    4WO4    4WW2    4WWK   
PDB (RSDB)1ZT4    2PO6    3HUJ    3SDX    3TZV    3U0P    3VWJ    3VWK    4EN3    4LHU    4MNG    4MQ7    4WO4    4WW2    4WWK   
Structural Biology KnowledgeBase1ZT4    2PO6    3HUJ    3SDX    3TZV    3U0P    3VWJ    3VWK    4EN3    4LHU    4MNG    4MQ7    4WO4    4WW2    4WWK   
SCOP (Structural Classification of Proteins)1ZT4    2PO6    3HUJ    3SDX    3TZV    3U0P    3VWJ    3VWK    4EN3    4LHU    4MNG    4MQ7    4WO4    4WW2    4WWK   
CATH (Classification of proteins structures)1ZT4    2PO6    3HUJ    3SDX    3TZV    3U0P    3VWJ    3VWK    4EN3    4LHU    4MNG    4MQ7    4WO4    4WW2    4WWK   
SuperfamilyP15813
Human Protein AtlasENSG00000158473
Peptide AtlasP15813
HPRD01780
IPIIPI00013435   
Protein Interaction databases
DIP (DOE-UCLA)P15813
IntAct (EBI)P15813
FunCoupENSG00000158473
BioGRIDCD1D
STRING (EMBL)CD1D
ZODIACCD1D
Ontologies - Pathways
QuickGOP15813
Ontology : AmiGOreceptor activity  cytoplasm  lysosome  lysosomal membrane  endoplasmic reticulum  endoplasmic reticulum membrane  plasma membrane  integral component of plasma membrane  cell surface  endosome membrane  viral process  detection of bacterium  basolateral plasma membrane  beta-2-microglobulin binding  lipid antigen binding  endogenous lipid antigen binding  exogenous lipid antigen binding  heterotypic cell-cell adhesion  positive regulation of T cell proliferation  histone binding  T cell selection  innate immune response  positive regulation of innate immune response  antigen processing and presentation, endogenous lipid antigen via MHC class Ib  antigen processing and presentation, exogenous lipid antigen via MHC class Ib  regulation of immune response  cell adhesion molecule binding  lipopeptide binding  
Ontology : EGO-EBIreceptor activity  cytoplasm  lysosome  lysosomal membrane  endoplasmic reticulum  endoplasmic reticulum membrane  plasma membrane  integral component of plasma membrane  cell surface  endosome membrane  viral process  detection of bacterium  basolateral plasma membrane  beta-2-microglobulin binding  lipid antigen binding  endogenous lipid antigen binding  exogenous lipid antigen binding  heterotypic cell-cell adhesion  positive regulation of T cell proliferation  histone binding  T cell selection  innate immune response  positive regulation of innate immune response  antigen processing and presentation, endogenous lipid antigen via MHC class Ib  antigen processing and presentation, exogenous lipid antigen via MHC class Ib  regulation of immune response  cell adhesion molecule binding  lipopeptide binding  
Pathways : KEGGHematopoietic cell lineage    Amoebiasis   
NDEx NetworkCD1D
Atlas of Cancer Signalling NetworkCD1D
Wikipedia pathwaysCD1D
Orthology - Evolution
OrthoDB912
GeneTree (enSembl)ENSG00000158473
Phylogenetic Trees/Animal Genes : TreeFamCD1D
HOVERGENP15813
HOGENOMP15813
Homologs : HomoloGeneCD1D
Homology/Alignments : Family Browser (UCSC)CD1D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD1D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD1D
dbVarCD1D
ClinVarCD1D
1000_GenomesCD1D 
Exome Variant ServerCD1D
ExAC (Exome Aggregation Consortium)CD1D (select the gene name)
Genetic variants : HAPMAP912
Genomic Variants (DGV)CD1D [DGVbeta]
DECIPHERCD1D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD1D 
Mutations
ICGC Data PortalCD1D 
TCGA Data PortalCD1D 
Broad Tumor PortalCD1D
OASIS PortalCD1D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD1D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD1D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD1D
DgiDB (Drug Gene Interaction Database)CD1D
DoCM (Curated mutations)CD1D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD1D (select a term)
intoGenCD1D
Cancer3DCD1D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM188410   
Orphanet
MedgenCD1D
Genetic Testing Registry CD1D
NextProtP15813 [Medical]
TSGene912
GENETestsCD1D
Target ValidationCD1D
Huge Navigator CD1D [HugePedia]
snp3D : Map Gene to Disease912
BioCentury BCIQCD1D
ClinGenCD1D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD912
Chemical/Pharm GKB GenePA26196
Clinical trialCD1D
Miscellaneous
canSAR (ICR)CD1D (select the gene name)
Probes
Litterature
PubMed165 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD1D
EVEXCD1D
GoPubMedCD1D
iHOPCD1D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:01:13 CEST 2017

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