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CD1E (CD1e molecule)

Identity

Alias_namesCD1E antigen, e polypeptide
CD1e antigen
Other aliasCD1A
R2
HGNC (Hugo) CD1E
LocusID (NCBI) 913
Atlas_Id 61613
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 158323486 and ends at 158327343 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD1E   1638
Cards
Entrez_Gene (NCBI)CD1E  913  CD1e molecule
AliasesCD1A; R2
GeneCards (Weizmann)CD1E
Ensembl hg19 (Hinxton)ENSG00000158488 [Gene_View]  chr1:158323486-158327343 [Contig_View]  CD1E [Vega]
Ensembl hg38 (Hinxton)ENSG00000158488 [Gene_View]  chr1:158323486-158327343 [Contig_View]  CD1E [Vega]
ICGC DataPortalENSG00000158488
TCGA cBioPortalCD1E
AceView (NCBI)CD1E
Genatlas (Paris)CD1E
WikiGenes913
SOURCE (Princeton)CD1E
Genetics Home Reference (NIH)CD1E
Genomic and cartography
GoldenPath hg19 (UCSC)CD1E  -     chr1:158323486-158327343 +  1q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CD1E  -     1q23.1   [Description]    (hg38-Dec_2013)
EnsemblCD1E - 1q23.1 [CytoView hg19]  CD1E - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBICD1E [Mapview hg19]  CD1E [Mapview hg38]
OMIM188411   
Gene and transcription
Genbank (Entrez)AA283335 AA354546 AJ289111 AJ289112 AJ289113
RefSeq transcript (Entrez)NM_001042583 NM_001042584 NM_001042585 NM_001042586 NM_001042587 NM_001185107 NM_001185108 NM_001185110 NM_001185112 NM_001185113 NM_001185114 NM_001185115 NM_030893
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)CD1E
Cluster EST : UnigeneHs.249217 [ NCBI ]
CGAP (NCI)Hs.249217
Alternative Splicing GalleryENSG00000158488
Gene ExpressionCD1E [ NCBI-GEO ]   CD1E [ EBI - ARRAY_EXPRESS ]   CD1E [ SEEK ]   CD1E [ MEM ]
Gene Expression Viewer (FireBrowse)CD1E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)913
GTEX Portal (Tissue expression)CD1E
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15812   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP15812  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP15812
Splice isoforms : SwissVarP15812
PhosPhoSitePlusP15812
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_C1-set    MHC_I-like_Ag-recog    MHC_I/II-like_Ag-recog   
Domain families : Pfam (Sanger)C1-set (PF07654)   
Domain families : Pfam (NCBI)pfam07654   
Domain families : Smart (EMBL)IGc1 (SM00407)  
Conserved Domain (NCBI)CD1E
DMDM Disease mutations913
Blocks (Seattle)CD1E
PDB (SRS)3S6C   
PDB (PDBSum)3S6C   
PDB (IMB)3S6C   
PDB (RSDB)3S6C   
Structural Biology KnowledgeBase3S6C   
SCOP (Structural Classification of Proteins)3S6C   
CATH (Classification of proteins structures)3S6C   
SuperfamilyP15812
Human Protein AtlasENSG00000158488
Peptide AtlasP15812
HPRD01781
IPIIPI00418592   IPI00552171   IPI00478106   IPI00646173   IPI00642364   IPI00645910   IPI00427983   IPI00427982   IPI00644470   IPI00427974   IPI00477640   IPI00647002   IPI00922844   IPI00908445   IPI00815913   IPI00816690   IPI00980649   IPI00640064   
Protein Interaction databases
DIP (DOE-UCLA)P15812
IntAct (EBI)P15812
FunCoupENSG00000158488
BioGRIDCD1E
STRING (EMBL)CD1E
ZODIACCD1E
Ontologies - Pathways
QuickGOP15812
Ontology : AmiGOGolgi membrane  early endosome  late endosome  plasma membrane  integral component of plasma membrane  immune response  beta-2-microglobulin binding  endogenous lipid antigen binding  exogenous lipid antigen binding  lysosomal lumen  antigen processing and presentation, exogenous lipid antigen via MHC class Ib  lipopeptide binding  
Ontology : EGO-EBIGolgi membrane  early endosome  late endosome  plasma membrane  integral component of plasma membrane  immune response  beta-2-microglobulin binding  endogenous lipid antigen binding  exogenous lipid antigen binding  lysosomal lumen  antigen processing and presentation, exogenous lipid antigen via MHC class Ib  lipopeptide binding  
Pathways : KEGGHematopoietic cell lineage   
NDEx NetworkCD1E
Atlas of Cancer Signalling NetworkCD1E
Wikipedia pathwaysCD1E
Orthology - Evolution
OrthoDB913
GeneTree (enSembl)ENSG00000158488
Phylogenetic Trees/Animal Genes : TreeFamCD1E
HOVERGENP15812
HOGENOMP15812
Homologs : HomoloGeneCD1E
Homology/Alignments : Family Browser (UCSC)CD1E
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD1E [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD1E
dbVarCD1E
ClinVarCD1E
1000_GenomesCD1E 
Exome Variant ServerCD1E
ExAC (Exome Aggregation Consortium)CD1E (select the gene name)
Genetic variants : HAPMAP913
Genomic Variants (DGV)CD1E [DGVbeta]
DECIPHER (Syndromes)1:158323486-158327343  ENSG00000158488
CONAN: Copy Number AnalysisCD1E 
Mutations
ICGC Data PortalCD1E 
TCGA Data PortalCD1E 
Broad Tumor PortalCD1E
OASIS PortalCD1E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD1E  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD1E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD1E
DgiDB (Drug Gene Interaction Database)CD1E
DoCM (Curated mutations)CD1E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD1E (select a term)
intoGenCD1E
Cancer3DCD1E(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM188411   
Orphanet
MedgenCD1E
Genetic Testing Registry CD1E
NextProtP15812 [Medical]
TSGene913
GENETestsCD1E
Huge Navigator CD1E [HugePedia]
snp3D : Map Gene to Disease913
BioCentury BCIQCD1E
ClinGenCD1E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD913
Chemical/Pharm GKB GenePA26197
Clinical trialCD1E
Miscellaneous
canSAR (ICR)CD1E (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD1E
EVEXCD1E
GoPubMedCD1E
iHOPCD1E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:58:48 CET 2017

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