Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CD200R1 (CD200 receptor 1)

Identity

Alias_namesMOX2R
MOX2 receptor
Alias_symbol (synonym)OX2R
HCRTR2
CD200R
Other alias
HGNC (Hugo) CD200R1
LocusID (NCBI) 131450
Atlas_Id 52788
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 112641532 and ends at 112693937 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GSK3B (3q13.33) / CD200R1 (3q13.2)ZBTB20 (3q13.31) / CD200R1 (3q13.2)ZBTB20 3q13.31 / CD200R1 3q13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD200R1   24235
Cards
Entrez_Gene (NCBI)CD200R1  131450  CD200 receptor 1
AliasesCD200R; HCRTR2; MOX2R; OX2R
GeneCards (Weizmann)CD200R1
Ensembl hg19 (Hinxton)ENSG00000163606 [Gene_View]  chr3:112641532-112693937 [Contig_View]  CD200R1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163606 [Gene_View]  chr3:112641532-112693937 [Contig_View]  CD200R1 [Vega]
ICGC DataPortalENSG00000163606
TCGA cBioPortalCD200R1
AceView (NCBI)CD200R1
Genatlas (Paris)CD200R1
WikiGenes131450
SOURCE (Princeton)CD200R1
Genetics Home Reference (NIH)CD200R1
Genomic and cartography
GoldenPath hg19 (UCSC)CD200R1  -     chr3:112641532-112693937 -  3q13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CD200R1  -     3q13.2   [Description]    (hg38-Dec_2013)
EnsemblCD200R1 - 3q13.2 [CytoView hg19]  CD200R1 - 3q13.2 [CytoView hg38]
Mapping of homologs : NCBICD200R1 [Mapview hg19]  CD200R1 [Mapview hg38]
OMIM607546   
Gene and transcription
Genbank (Entrez)AF283760 AF495380 AF497548 AF497549 AF497550
RefSeq transcript (Entrez)NM_138806 NM_138939 NM_138940 NM_170780
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)CD200R1
Cluster EST : UnigeneHs.309158 [ NCBI ]
CGAP (NCI)Hs.309158
Alternative Splicing GalleryENSG00000163606
Gene ExpressionCD200R1 [ NCBI-GEO ]   CD200R1 [ EBI - ARRAY_EXPRESS ]   CD200R1 [ SEEK ]   CD200R1 [ MEM ]
Gene Expression Viewer (FireBrowse)CD200R1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131450
GTEX Portal (Tissue expression)CD200R1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TD46   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TD46  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TD46
Splice isoforms : SwissVarQ8TD46
PhosPhoSitePlusQ8TD46
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)CD80_C2-set    Ig-like_dom    Ig-like_fold    Ig_sub   
Domain families : Pfam (Sanger)C2-set_2 (PF08205)   
Domain families : Pfam (NCBI)pfam08205   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)CD200R1
DMDM Disease mutations131450
Blocks (Seattle)CD200R1
SuperfamilyQ8TD46
Human Protein AtlasENSG00000163606
Peptide AtlasQ8TD46
HPRD09609
IPIIPI00295253   IPI00295254   IPI00295255   IPI00295256   IPI00909550   
Protein Interaction databases
DIP (DOE-UCLA)Q8TD46
IntAct (EBI)Q8TD46
FunCoupENSG00000163606
BioGRIDCD200R1
STRING (EMBL)CD200R1
ZODIACCD200R1
Ontologies - Pathways
QuickGOQ8TD46
Ontology : AmiGOprotein binding  extracellular region  plasma membrane  integral component of membrane  viral process  receptor complex  regulation of immune response  
Ontology : EGO-EBIprotein binding  extracellular region  plasma membrane  integral component of membrane  viral process  receptor complex  regulation of immune response  
NDEx NetworkCD200R1
Atlas of Cancer Signalling NetworkCD200R1
Wikipedia pathwaysCD200R1
Orthology - Evolution
OrthoDB131450
GeneTree (enSembl)ENSG00000163606
Phylogenetic Trees/Animal Genes : TreeFamCD200R1
HOVERGENQ8TD46
HOGENOMQ8TD46
Homologs : HomoloGeneCD200R1
Homology/Alignments : Family Browser (UCSC)CD200R1
Gene fusions - Rearrangements
Fusion : MitelmanZBTB20/CD200R1 [3q13.31/3q13.2]  [t(3;3)(q13;q13)]  
Fusion: TCGAZBTB20 3q13.31 CD200R1 3q13.2 KIRC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD200R1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD200R1
dbVarCD200R1
ClinVarCD200R1
1000_GenomesCD200R1 
Exome Variant ServerCD200R1
ExAC (Exome Aggregation Consortium)CD200R1 (select the gene name)
Genetic variants : HAPMAP131450
Genomic Variants (DGV)CD200R1 [DGVbeta]
DECIPHER (Syndromes)3:112641532-112693937  ENSG00000163606
CONAN: Copy Number AnalysisCD200R1 
Mutations
ICGC Data PortalCD200R1 
TCGA Data PortalCD200R1 
Broad Tumor PortalCD200R1
OASIS PortalCD200R1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD200R1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD200R1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD200R1
DgiDB (Drug Gene Interaction Database)CD200R1
DoCM (Curated mutations)CD200R1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD200R1 (select a term)
intoGenCD200R1
Cancer3DCD200R1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607546   
Orphanet
MedgenCD200R1
Genetic Testing Registry CD200R1
NextProtQ8TD46 [Medical]
TSGene131450
GENETestsCD200R1
Huge Navigator CD200R1 [HugePedia]
snp3D : Map Gene to Disease131450
BioCentury BCIQCD200R1
ClinGenCD200R1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD131450
Chemical/Pharm GKB GenePA134922446
Clinical trialCD200R1
Miscellaneous
canSAR (ICR)CD200R1 (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD200R1
EVEXCD200R1
GoPubMedCD200R1
iHOPCD200R1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:59:21 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.