Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CD200R1L (CD200 receptor 1 like)

Identity

Alias_namesCD200 receptor 1-like
Alias_symbol (synonym)CD200RLa
CD200R2
Other alias
HGNC (Hugo) CD200R1L
LocusID (NCBI) 344807
Atlas_Id 61614
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 112815709 and ends at 112845950 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IFT57 (3q13.12) / CD200R1L (3q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD200R1L   24665
Cards
Entrez_Gene (NCBI)CD200R1L  344807  CD200 receptor 1 like
AliasesCD200R2; CD200RLa
GeneCards (Weizmann)CD200R1L
Ensembl hg19 (Hinxton)ENSG00000206531 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206531 [Gene_View]  chr3:112815709-112845950 [Contig_View]  CD200R1L [Vega]
ICGC DataPortalENSG00000206531
TCGA cBioPortalCD200R1L
AceView (NCBI)CD200R1L
Genatlas (Paris)CD200R1L
WikiGenes344807
SOURCE (Princeton)CD200R1L
Genetics Home Reference (NIH)CD200R1L
Genomic and cartography
GoldenPath hg38 (UCSC)CD200R1L  -     chr3:112815709-112845950 -  3q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD200R1L  -     3q13.2   [Description]    (hg19-Feb_2009)
EnsemblCD200R1L - 3q13.2 [CytoView hg19]  CD200R1L - 3q13.2 [CytoView hg38]
Mapping of homologs : NCBICD200R1L [Mapview hg19]  CD200R1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY284976 AY552790 BC144504 BC144507 BC172292
RefSeq transcript (Entrez)NM_001008784 NM_001199215
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD200R1L
Cluster EST : UnigeneHs.531814 [ NCBI ]
CGAP (NCI)Hs.531814
Alternative Splicing GalleryENSG00000206531
Gene ExpressionCD200R1L [ NCBI-GEO ]   CD200R1L [ EBI - ARRAY_EXPRESS ]   CD200R1L [ SEEK ]   CD200R1L [ MEM ]
Gene Expression Viewer (FireBrowse)CD200R1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)344807
GTEX Portal (Tissue expression)CD200R1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6Q8B3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6Q8B3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6Q8B3
Splice isoforms : SwissVarQ6Q8B3
PhosPhoSitePlusQ6Q8B3
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)CD80_C2-set    Ig-like_dom    Ig-like_fold   
Domain families : Pfam (Sanger)C2-set_2 (PF08205)   
Domain families : Pfam (NCBI)pfam08205   
Conserved Domain (NCBI)CD200R1L
DMDM Disease mutations344807
Blocks (Seattle)CD200R1L
SuperfamilyQ6Q8B3
Human Protein AtlasENSG00000206531
Peptide AtlasQ6Q8B3
HPRD16691
IPIIPI00455582   IPI00902615   IPI00946627   
Protein Interaction databases
DIP (DOE-UCLA)Q6Q8B3
IntAct (EBI)Q6Q8B3
FunCoupENSG00000206531
BioGRIDCD200R1L
STRING (EMBL)CD200R1L
ZODIACCD200R1L
Ontologies - Pathways
QuickGOQ6Q8B3
Ontology : AmiGOreceptor activity  external side of plasma membrane  integral component of membrane  
Ontology : EGO-EBIreceptor activity  external side of plasma membrane  integral component of membrane  
NDEx NetworkCD200R1L
Aplas mf0Cancer Signalling NetworkCD200R1L
Wikipedia pathwaysCD200R1L
Orthology - Evolution
OrthoDB344807
GeneTree (enSembl)ENSG00000206531
Phylogenetic Trees/Animal Genes : TreeFamCD200R1L
HOVERGENQ6Q8B3
HOGENOMQ6Q8B3
Homologs : HomoloGeneCD200R1L
Homology/Alignments : Family Browser (UCSC)CD200R1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD200R1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD200R1L
dbVarCD200R1L
ClinVarCD200R1L
1000_GenomesCD200R1L 
Exome Variant ServerCD200R1L
ExAC (Exome Aggregation Consortium)CD200R1L (select the gene name)
Genetic variants : HAPMAP344807
Genomic Variants (DGV)CD200R1L [DGVbeta]
DECIPHERCD200R1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD200R1L 
Mutations
ICGC Data PortalCD200R1L 
TCGA Data PortalCD200R1L 
Broad Tumor PortalCD200R1L
OASIS PortalCD200R1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD200R1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD200R1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD200R1L
DgiDB (Drug Gene Interaction Database)CD200R1L
DoCM (Curated mutations)CD200R1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD200R1L (select a term)
intoGenCD200R1L
Cancer3DCD200R1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCD200R1L
Genetic Testing Registry CD200R1L
NextProtQ6Q8B3 [Medical]
TSGene344807
GENETestsCD200R1L
Target ValidationCD200R1L
Huge Navigator CD200R1L [HugePedia]
snp3D : Map Gene to Disease344807
BioCentury BCIQCD200R1L
ClinGenCD200R1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD344807
Chemical/Pharm GKB GenePA164717784
Clinical trialCD200R1L
Miscellaneous
canSAR (ICR)CD200R1L (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD200R1L
EVEXCD200R1L
GoPubMedCD200R1L
iHOPCD200R1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:04:21 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.