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CD207 (CD207 molecule)

Identity

Alias_namesCD207 antigen, langerin
CD207 molecule, langerin
Alias_symbol (synonym)Langerin
CLEC4K
Other alias
HGNC (Hugo) CD207
LocusID (NCBI) 50489
Atlas_Id 56545
Location 2p13.3  [Link to chromosome band 2p13]
Location_base_pair Starts at 70830212 and ends at 70835823 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD207   17935
Cards
Entrez_Gene (NCBI)CD207  50489  CD207 molecule
AliasesCLEC4K
GeneCards (Weizmann)CD207
Ensembl hg19 (Hinxton)ENSG00000116031 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000116031 [Gene_View]  chr2:70830212-70835823 [Contig_View]  CD207 [Vega]
ICGC DataPortalENSG00000116031
TCGA cBioPortalCD207
AceView (NCBI)CD207
Genatlas (Paris)CD207
WikiGenes50489
SOURCE (Princeton)CD207
Genetics Home Reference (NIH)CD207
Genomic and cartography
GoldenPath hg38 (UCSC)CD207  -     chr2:70830212-70835823 -  2p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD207  -     2p13.3   [Description]    (hg19-Feb_2009)
EnsemblCD207 - 2p13.3 [CytoView hg19]  CD207 - 2p13.3 [CytoView hg38]
Mapping of homologs : NCBICD207 [Mapview hg19]  CD207 [Mapview hg38]
OMIM604862   613393   
Gene and transcription
Genbank (Entrez)AJ242859 AK314927 BC022278 BX104865 DQ891964
RefSeq transcript (Entrez)NM_015717
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD207
Cluster EST : UnigeneHs.199731 [ NCBI ]
CGAP (NCI)Hs.199731
Alternative Splicing GalleryENSG00000116031
Gene ExpressionCD207 [ NCBI-GEO ]   CD207 [ EBI - ARRAY_EXPRESS ]   CD207 [ SEEK ]   CD207 [ MEM ]
Gene Expression Viewer (FireBrowse)CD207 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50489
GTEX Portal (Tissue expression)CD207
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJ71   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJ71  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJ71
Splice isoforms : SwissVarQ9UJ71
PhosPhoSitePlusQ9UJ71
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    C-type_lectin_CS    CD209-like_CTLD    CTDL_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CD207
DMDM Disease mutations50489
Blocks (Seattle)CD207
PDB (SRS)3C22    3KQG    3P5D    3P5E    3P5F    3P5G    3P5H    3P5I    3P7F    3P7G    3P7H    4AK8    4N32    4N33    4N34    4N35    4N36    4N37    4N38   
PDB (PDBSum)3C22    3KQG    3P5D    3P5E    3P5F    3P5G    3P5H    3P5I    3P7F    3P7G    3P7H    4AK8    4N32    4N33    4N34    4N35    4N36    4N37    4N38   
PDB (IMB)3C22    3KQG    3P5D    3P5E    3P5F    3P5G    3P5H    3P5I    3P7F    3P7G    3P7H    4AK8    4N32    4N33    4N34    4N35    4N36    4N37    4N38   
PDB (RSDB)3C22    3KQG    3P5D    3P5E    3P5F    3P5G    3P5H    3P5I    3P7F    3P7G    3P7H    4AK8    4N32    4N33    4N34    4N35    4N36    4N37    4N38   
Structural Biology KnowledgeBase3C22    3KQG    3P5D    3P5E    3P5F    3P5G    3P5H    3P5I    3P7F    3P7G    3P7H    4AK8    4N32    4N33    4N34    4N35    4N36    4N37    4N38   
SCOP (Structural Classification of Proteins)3C22    3KQG    3P5D    3P5E    3P5F    3P5G    3P5H    3P5I    3P7F    3P7G    3P7H    4AK8    4N32    4N33    4N34    4N35    4N36    4N37    4N38   
CATH (Classification of proteins structures)3C22    3KQG    3P5D    3P5E    3P5F    3P5G    3P5H    3P5I    3P7F    3P7G    3P7H    4AK8    4N32    4N33    4N34    4N35    4N36    4N37    4N38   
SuperfamilyQ9UJ71
Human Protein AtlasENSG00000116031
Peptide AtlasQ9UJ71
HPRD07278
IPIIPI00296527   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJ71
IntAct (EBI)Q9UJ71
FunCoupENSG00000116031
BioGRIDCD207
STRING (EMBL)CD207
ZODIACCD207
Ontologies - Pathways
QuickGOQ9UJ71
Ontology : AmiGOantigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent  protein binding  mannose binding  plasma membrane  receptor-mediated endocytosis  integral component of membrane  endocytic vesicle  carbohydrate binding  clathrin-coated endocytic vesicle membrane  early endosome membrane  defense response to virus  
Ontology : EGO-EBIantigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent  protein binding  mannose binding  plasma membrane  receptor-mediated endocytosis  integral component of membrane  endocytic vesicle  carbohydrate binding  clathrin-coated endocytic vesicle membrane  early endosome membrane  defense response to virus  
NDEx NetworkCD207
Atlas of Cancer Signalling NetworkCD207
Wikipedia pathwaysCD207
Orthology - Evolution
OrthoDB50489
GeneTree (enSembl)ENSG00000116031
Phylogenetic Trees/Animal Genes : TreeFamCD207
HOVERGENQ9UJ71
HOGENOMQ9UJ71
Homologs : HomoloGeneCD207
Homology/Alignments : Family Browser (UCSC)CD207
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD207 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD207
dbVarCD207
ClinVarCD207
1000_GenomesCD207 
Exome Variant ServerCD207
ExAC (Exome Aggregation Consortium)CD207 (select the gene name)
Genetic variants : HAPMAP50489
Genomic Variants (DGV)CD207 [DGVbeta]
DECIPHERCD207 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD207 
Mutations
ICGC Data PortalCD207 
TCGA Data PortalCD207 
Broad Tumor PortalCD207
OASIS PortalCD207 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD207  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD207
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD207
DgiDB (Drug Gene Interaction Database)CD207
DoCM (Curated mutations)CD207 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD207 (select a term)
intoGenCD207
Cancer3DCD207(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604862    613393   
Orphanet
MedgenCD207
Genetic Testing Registry CD207
NextProtQ9UJ71 [Medical]
TSGene50489
GENETestsCD207
Target ValidationCD207
Huge Navigator CD207 [HugePedia]
snp3D : Map Gene to Disease50489
BioCentury BCIQCD207
ClinGenCD207
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50489
Chemical/Pharm GKB GenePA134986203
Clinical trialCD207
Miscellaneous
canSAR (ICR)CD207 (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD207
EVEXCD207
GoPubMedCD207
iHOPCD207
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:27:22 CEST 2017

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