Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CD27-AS1 (CD27 antisense RNA 1)

Identity

Alias_namesCD27 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) CD27-AS1
LocusID (NCBI) 678655
Atlas_Id 61617
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 6439001 and ends at 6451517 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
VAMP1 (12p13.31) / CD27-AS1 (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD27-AS1   43896
Cards
Entrez_Gene (NCBI)CD27-AS1  678655  CD27 antisense RNA 1
Aliases
GeneCards (Weizmann)CD27-AS1
Ensembl hg19 (Hinxton)ENSG00000215039 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215039 [Gene_View]  chr12:6439001-6451517 [Contig_View]  CD27-AS1 [Vega]
ICGC DataPortalENSG00000215039
TCGA cBioPortalCD27-AS1
AceView (NCBI)CD27-AS1
Genatlas (Paris)CD27-AS1
WikiGenes678655
SOURCE (Princeton)CD27-AS1
Genetics Home Reference (NIH)CD27-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)CD27-AS1  -     chr12:6439001-6451517 -  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD27-AS1  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblCD27-AS1 - 12p13.31 [CytoView hg19]  CD27-AS1 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBICD27-AS1 [Mapview hg19]  CD27-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056500 AK128574 AK307123 BC033973 BC041960
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD27-AS1
Cluster EST : UnigeneHs.655224 [ NCBI ]
CGAP (NCI)Hs.655224
Alternative Splicing GalleryENSG00000215039
Gene ExpressionCD27-AS1 [ NCBI-GEO ]   CD27-AS1 [ EBI - ARRAY_EXPRESS ]   CD27-AS1 [ SEEK ]   CD27-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)CD27-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)678655
GTEX Portal (Tissue expression)CD27-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CD27-AS1
DMDM Disease mutations678655
Blocks (Seattle)CD27-AS1
Human Protein AtlasENSG00000215039
Protein Interaction databases
FunCoupENSG00000215039
BioGRIDCD27-AS1
STRING (EMBL)CD27-AS1
ZODIACCD27-AS1
Ontologies - Pathways
Huge Navigator CD27-AS1 [HugePedia]
snp3D : Map Gene to Disease678655
BioCentury BCIQCD27-AS1
ClinGenCD27-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD678655
Clinical trialCD27-AS1
Miscellaneous
canSAR (ICR)CD27-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD27-AS1
EVEXCD27-AS1
GoPubMedCD27-AS1
iHOPCD27-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:05:10 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.