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CD300A (CD300a molecule)

Identity

Alias_namesCD300a antigen
Alias_symbol (synonym)Irp60
CMRF35H
CMRF-35-H9
IRC1
IRC2
IGSF12
Other aliasCLM-8
CMRF-35H
CMRF35-H
CMRF35-H9
CMRF35H9
IRC1/IRC2
IRp60
HGNC (Hugo) CD300A
LocusID (NCBI) 11314
Atlas_Id 40111
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74466383 and ends at 74484798 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD300A   19319
Cards
Entrez_Gene (NCBI)CD300A  11314  CD300a molecule
AliasesCLM-8; CMRF-35-H9; CMRF-35H; CMRF35-H; 
CMRF35-H9; CMRF35H; CMRF35H9; IGSF12; IRC1; IRC1/IRC2; IRC2; IRp60
GeneCards (Weizmann)CD300A
Ensembl hg19 (Hinxton)ENSG00000167851 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167851 [Gene_View]  chr17:74466383-74484798 [Contig_View]  CD300A [Vega]
ICGC DataPortalENSG00000167851
TCGA cBioPortalCD300A
AceView (NCBI)CD300A
Genatlas (Paris)CD300A
WikiGenes11314
SOURCE (Princeton)CD300A
Genetics Home Reference (NIH)CD300A
Genomic and cartography
GoldenPath hg38 (UCSC)CD300A  -     chr17:74466383-74484798 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD300A  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblCD300A - 17q25.1 [CytoView hg19]  CD300A - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBICD300A [Mapview hg19]  CD300A [Mapview hg38]
OMIM606790   
Gene and transcription
Genbank (Entrez)AF020314 AF161346 AJ010101 AJ010102 AJ010103
RefSeq transcript (Entrez)NM_001256841 NM_001330456 NM_001330457 NM_007261
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD300A
Cluster EST : UnigeneHs.9688 [ NCBI ]
CGAP (NCI)Hs.9688
Alternative Splicing GalleryENSG00000167851
Gene ExpressionCD300A [ NCBI-GEO ]   CD300A [ EBI - ARRAY_EXPRESS ]   CD300A [ SEEK ]   CD300A [ MEM ]
Gene Expression Viewer (FireBrowse)CD300A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11314
GTEX Portal (Tissue expression)CD300A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGN4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGN4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGN4
Splice isoforms : SwissVarQ9UGN4
PhosPhoSitePlusQ9UGN4
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)CD300A
DMDM Disease mutations11314
Blocks (Seattle)CD300A
PDB (SRS)2Q87   
PDB (PDBSum)2Q87   
PDB (IMB)2Q87   
PDB (RSDB)2Q87   
Structural Biology KnowledgeBase2Q87   
SCOP (Structural Classification of Proteins)2Q87   
CATH (Classification of proteins structures)2Q87   
SuperfamilyQ9UGN4
Human Protein AtlasENSG00000167851
Peptide AtlasQ9UGN4
HPRD09492
IPIIPI00414784   IPI00054095   IPI00384625   IPI00797111   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGN4
IntAct (EBI)Q9UGN4
FunCoupENSG00000167851
BioGRIDCD300A
STRING (EMBL)CD300A
ZODIACCD300A
Ontologies - Pathways
QuickGOQ9UGN4
Ontology : AmiGOphosphatidylserine binding  protein binding  plasma membrane  cell adhesion  signal transduction  phosphatidylethanolamine binding  membrane  integral component of membrane  negative regulation of B cell proliferation  positive regulation of phosphoprotein phosphatase activity  negative regulation of mast cell activation involved in immune response  negative regulation of MyD88-dependent toll-like receptor signaling pathway  signaling receptor activity  negative regulation of mast cell degranulation  neutrophil degranulation  negative regulation of MAP kinase activity  negative regulation of fibroblast proliferation  regulation of immune response  regulation of T cell receptor signaling pathway  negative regulation of B cell receptor signaling pathway  negative regulation of NK T cell activation  negative regulation of phagocytosis, engulfment  extracellular exosome  tertiary granule membrane  ficolin-1-rich granule membrane  negative regulation of neutrophil activation  negative regulation of eosinophil activation  negative regulation of activation of Janus kinase activity  negative regulation of eosinophil migration  
Ontology : EGO-EBIphosphatidylserine binding  protein binding  plasma membrane  cell adhesion  signal transduction  phosphatidylethanolamine binding  membrane  integral component of membrane  negative regulation of B cell proliferation  positive regulation of phosphoprotein phosphatase activity  negative regulation of mast cell activation involved in immune response  negative regulation of MyD88-dependent toll-like receptor signaling pathway  signaling receptor activity  negative regulation of mast cell degranulation  neutrophil degranulation  negative regulation of MAP kinase activity  negative regulation of fibroblast proliferation  regulation of immune response  regulation of T cell receptor signaling pathway  negative regulation of B cell receptor signaling pathway  negative regulation of NK T cell activation  negative regulation of phagocytosis, engulfment  extracellular exosome  tertiary granule membrane  ficolin-1-rich granule membrane  negative regulation of neutrophil activation  negative regulation of eosinophil activation  negative regulation of activation of Janus kinase activity  negative regulation of eosinophil migration  
NDEx NetworkCD300A
Atlas of Cancer Signalling NetworkCD300A
Wikipedia pathwaysCD300A
Orthology - Evolution
OrthoDB11314
GeneTree (enSembl)ENSG00000167851
Phylogenetic Trees/Animal Genes : TreeFamCD300A
HOVERGENQ9UGN4
HOGENOMQ9UGN4
Homologs : HomoloGeneCD300A
Homology/Alignments : Family Browser (UCSC)CD300A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD300A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD300A
dbVarCD300A
ClinVarCD300A
1000_GenomesCD300A 
Exome Variant ServerCD300A
ExAC (Exome Aggregation Consortium)CD300A (select the gene name)
Genetic variants : HAPMAP11314
Genomic Variants (DGV)CD300A [DGVbeta]
DECIPHERCD300A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD300A 
Mutations
ICGC Data PortalCD300A 
TCGA Data PortalCD300A 
Broad Tumor PortalCD300A
OASIS PortalCD300A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD300A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD300A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD300A
DgiDB (Drug Gene Interaction Database)CD300A
DoCM (Curated mutations)CD300A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD300A (select a term)
intoGenCD300A
Cancer3DCD300A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606790   
Orphanet
MedgenCD300A
Genetic Testing Registry CD300A
NextProtQ9UGN4 [Medical]
TSGene11314
GENETestsCD300A
Target ValidationCD300A
Huge Navigator CD300A [HugePedia]
snp3D : Map Gene to Disease11314
BioCentury BCIQCD300A
ClinGenCD300A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11314
Chemical/Pharm GKB GenePA142672149
Clinical trialCD300A
Miscellaneous
canSAR (ICR)CD300A (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD300A
EVEXCD300A
GoPubMedCD300A
iHOPCD300A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 12:27:24 CEST 2017

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