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CD300C (CD300c molecule)

Identity

Alias_namesCD300c antigen
Alias_symbol (synonym)CMRF35
LIR
CMRF-35A
CMRF35A
IGSF16
Other aliasCLM-6
CMRF-35
CMRF35-A1
CMRF35A1
HGNC (Hugo) CD300C
LocusID (NCBI) 10871
Atlas_Id 61619
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74541066 and ends at 74546171 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD300C   19320
Cards
Entrez_Gene (NCBI)CD300C  10871  CD300c molecule
AliasesCLM-6; CMRF-35; CMRF-35A; CMRF35; 
CMRF35-A1; CMRF35A; CMRF35A1; IGSF16; LIR
GeneCards (Weizmann)CD300C
Ensembl hg19 (Hinxton)ENSG00000167850 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167850 [Gene_View]  chr17:74541066-74546171 [Contig_View]  CD300C [Vega]
ICGC DataPortalENSG00000167850
TCGA cBioPortalCD300C
AceView (NCBI)CD300C
Genatlas (Paris)CD300C
WikiGenes10871
SOURCE (Princeton)CD300C
Genetics Home Reference (NIH)CD300C
Genomic and cartography
GoldenPath hg38 (UCSC)CD300C  -     chr17:74541066-74546171 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD300C  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblCD300C - 17q25.1 [CytoView hg19]  CD300C - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBICD300C [Mapview hg19]  CD300C [Mapview hg38]
OMIM606786   
Gene and transcription
Genbank (Entrez)BC022279 BF508242 BP298972 DQ892000 DQ895190
RefSeq transcript (Entrez)NM_006678
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD300C
Cluster EST : UnigeneHs.2605 [ NCBI ]
CGAP (NCI)Hs.2605
Alternative Splicing GalleryENSG00000167850
Gene ExpressionCD300C [ NCBI-GEO ]   CD300C [ EBI - ARRAY_EXPRESS ]   CD300C [ SEEK ]   CD300C [ MEM ]
Gene Expression Viewer (FireBrowse)CD300C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10871
GTEX Portal (Tissue expression)CD300C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08708   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ08708  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08708
Splice isoforms : SwissVarQ08708
PhosPhoSitePlusQ08708
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)CD300C
DMDM Disease mutations10871
Blocks (Seattle)CD300C
SuperfamilyQ08708
Human Protein AtlasENSG00000167850
Peptide AtlasQ08708
HPRD09491
IPIIPI00003835   
Protein Interaction databases
DIP (DOE-UCLA)Q08708
IntAct (EBI)Q08708
FunCoupENSG00000167850
BioGRIDCD300C
STRING (EMBL)CD300C
ZODIACCD300C
Ontologies - Pathways
QuickGOQ08708
Ontology : AmiGOimmune system process  transmembrane signaling receptor activity  plasma membrane  integral component of plasma membrane  cellular defense response  signal transduction  regulation of immune response  
Ontology : EGO-EBIimmune system process  transmembrane signaling receptor activity  plasma membrane  integral component of plasma membrane  cellular defense response  signal transduction  regulation of immune response  
NDEx NetworkCD300C
Atlas of Cancer Signalling NetworkCD300C
Wikipedia pathwaysCD300C
Orthology - Evolution
OrthoDB10871
GeneTree (enSembl)ENSG00000167850
Phylogenetic Trees/Animal Genes : TreeFamCD300C
HOVERGENQ08708
HOGENOMQ08708
Homologs : HomoloGeneCD300C
Homology/Alignments : Family Browser (UCSC)CD300C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD300C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD300C
dbVarCD300C
ClinVarCD300C
1000_GenomesCD300C 
Exome Variant ServerCD300C
ExAC (Exome Aggregation Consortium)CD300C (select the gene name)
Genetic variants : HAPMAP10871
Genomic Variants (DGV)CD300C [DGVbeta]
DECIPHERCD300C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD300C 
Mutations
ICGC Data PortalCD300C 
TCGA Data PortalCD300C 
Broad Tumor PortalCD300C
OASIS PortalCD300C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD300C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD300C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD300C
DgiDB (Drug Gene Interaction Database)CD300C
DoCM (Curated mutations)CD300C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD300C (select a term)
intoGenCD300C
Cancer3DCD300C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606786   
Orphanet
MedgenCD300C
Genetic Testing Registry CD300C
NextProtQ08708 [Medical]
TSGene10871
GENETestsCD300C
Target ValidationCD300C
Huge Navigator CD300C [HugePedia]
snp3D : Map Gene to Disease10871
BioCentury BCIQCD300C
ClinGenCD300C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10871
Chemical/Pharm GKB GenePA142672150
Clinical trialCD300C
Miscellaneous
canSAR (ICR)CD300C (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD300C
EVEXCD300C
GoPubMedCD300C
iHOPCD300C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:52 CEST 2017

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