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CD300E (CD300e molecule)

Identity

Alias (NCBI)CD300LE
CLM-2
CLM2
CMRF35-A5
IREM-2
IREM2
PIgR-2
PIgR2
HGNC (Hugo) CD300E
HGNC Alias symbIREM2
CLM2
HGNC Previous nameCD300LE
HGNC Previous nameCD300 antigen like family member E
 CD300e antigen
LocusID (NCBI) 342510
Atlas_Id 61620
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74609883 and ends at 74623758 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CD300E   28874
Cards
Entrez_Gene (NCBI)CD300E    CD300e molecule
AliasesCD300LE; CLM-2; CLM2; CMRF35-A5; 
IREM-2; IREM2; PIgR-2; PIgR2
GeneCards (Weizmann)CD300E
Ensembl hg19 (Hinxton)ENSG00000186407 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186407 [Gene_View]  ENSG00000186407 [Sequence]  chr17:74609883-74623758 [Contig_View]  CD300E [Vega]
ICGC DataPortalENSG00000186407
TCGA cBioPortalCD300E
AceView (NCBI)CD300E
Genatlas (Paris)CD300E
SOURCE (Princeton)CD300E
Genetics Home Reference (NIH)CD300E
Genomic and cartography
GoldenPath hg38 (UCSC)CD300E  -     chr17:74609883-74623758 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD300E  -     17q25.1   [Description]    (hg19-Feb_2009)
GoldenPathCD300E - 17q25.1 [CytoView hg19]  CD300E - 17q25.1 [CytoView hg38]
ImmunoBaseENSG00000186407
genome Data Viewer NCBICD300E [Mapview hg19]  
OMIM609801   
Gene and transcription
Genbank (Entrez)AF395839 AK298031 AK303545 BC100888 BC100889
RefSeq transcript (Entrez)NM_181449
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD300E
Alternative Splicing GalleryENSG00000186407
Gene ExpressionCD300E [ NCBI-GEO ]   CD300E [ EBI - ARRAY_EXPRESS ]   CD300E [ SEEK ]   CD300E [ MEM ]
Gene Expression Viewer (FireBrowse)CD300E [ Firebrowse - Broad ]
GenevisibleExpression of CD300E in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342510
GTEX Portal (Tissue expression)CD300E
Human Protein AtlasENSG00000186407-CD300E [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ496F6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ496F6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ496F6
Splice isoforms : SwissVarQ496F6
PhosPhoSitePlusQ496F6
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)CD300E
Blocks (Seattle)CD300E
SuperfamilyQ496F6
Human Protein Atlas [tissue]ENSG00000186407-CD300E [tissue]
Peptide AtlasQ496F6
HPRD17158
IPIIPI00942366   IPI00376457   IPI00789150   
Protein Interaction databases
DIP (DOE-UCLA)Q496F6
IntAct (EBI)Q496F6
BioGRIDCD300E
STRING (EMBL)CD300E
ZODIACCD300E
Ontologies - Pathways
QuickGOQ496F6
Ontology : AmiGOplasma membrane  integral component of membrane  innate immune response  regulation of immune response  
Ontology : EGO-EBIplasma membrane  integral component of membrane  innate immune response  regulation of immune response  
NDEx NetworkCD300E
Atlas of Cancer Signalling NetworkCD300E
Wikipedia pathwaysCD300E
Orthology - Evolution
OrthoDB342510
GeneTree (enSembl)ENSG00000186407
Phylogenetic Trees/Animal Genes : TreeFamCD300E
HOGENOMQ496F6
Homologs : HomoloGeneCD300E
Homology/Alignments : Family Browser (UCSC)CD300E
Gene fusions - Rearrangements
Fusion : QuiverCD300E
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD300E [hg38]
dbVarCD300E
ClinVarCD300E
MonarchCD300E
1000_GenomesCD300E 
Exome Variant ServerCD300E
GNOMAD BrowserENSG00000186407
Varsome BrowserCD300E
Genomic Variants (DGV)CD300E [DGVbeta]
DECIPHERCD300E [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD300E 
Mutations
ICGC Data PortalCD300E 
TCGA Data PortalCD300E 
Broad Tumor PortalCD300E
OASIS PortalCD300E [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD300E  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCD300E
Mutations and Diseases : HGMDCD300E
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD300E
DgiDB (Drug Gene Interaction Database)CD300E
DoCM (Curated mutations)CD300E (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD300E (select a term)
intoGenCD300E
Cancer3DCD300E(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609801   
Orphanet
DisGeNETCD300E
MedgenCD300E
Genetic Testing Registry CD300E
NextProtQ496F6 [Medical]
GENETestsCD300E
Target ValidationCD300E
Huge Navigator CD300E [HugePedia]
ClinGenCD300E
Clinical trials, drugs, therapy
MyCancerGenomeCD300E
Protein Interactions : CTD
Pharm GKB GenePA142672152
Clinical trialCD300E
Miscellaneous
canSAR (ICR)CD300E (select the gene name)
HarmonizomeCD300E
DataMed IndexCD300E
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD300E
EVEXCD300E
GoPubMedCD300E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:49:21 CET 2020
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