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CD300LB (CD300 molecule like family member b)

Identity

Alias_namesCD300 antigen like family member B
CD300 molecule-like family member b
Alias_symbol (synonym)TREM5
CLM7
Other aliasCD300b
CLM-7
CMRF35-A2
IREM-3
IREM3
TREM-5
HGNC (Hugo) CD300LB
LocusID (NCBI) 124599
Atlas_Id 61621
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74521174 and ends at 74531474 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HLA-F (6p22.1) / CD300LB (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD300LB   30811
Cards
Entrez_Gene (NCBI)CD300LB  124599  CD300 molecule like family member b
AliasesCD300b; CLM-7; CLM7; CMRF35-A2; 
IREM-3; IREM3; TREM-5; TREM5
GeneCards (Weizmann)CD300LB
Ensembl hg19 (Hinxton)ENSG00000178789 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178789 [Gene_View]  chr17:74521174-74531474 [Contig_View]  CD300LB [Vega]
ICGC DataPortalENSG00000178789
TCGA cBioPortalCD300LB
AceView (NCBI)CD300LB
Genatlas (Paris)CD300LB
WikiGenes124599
SOURCE (Princeton)CD300LB
Genetics Home Reference (NIH)CD300LB
Genomic and cartography
GoldenPath hg38 (UCSC)CD300LB  -     chr17:74521174-74531474 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD300LB  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblCD300LB - 17q25.1 [CytoView hg19]  CD300LB - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBICD300LB [Mapview hg19]  CD300LB [Mapview hg38]
OMIM610705   
Gene and transcription
Genbank (Entrez)AF427618 AK290925 AK298665 AY359025 AY646929
RefSeq transcript (Entrez)NM_174892
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD300LB
Cluster EST : UnigeneHs.313343 [ NCBI ]
CGAP (NCI)Hs.313343
Alternative Splicing GalleryENSG00000178789
Gene ExpressionCD300LB [ NCBI-GEO ]   CD300LB [ EBI - ARRAY_EXPRESS ]   CD300LB [ SEEK ]   CD300LB [ MEM ]
Gene Expression Viewer (FireBrowse)CD300LB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124599
GTEX Portal (Tissue expression)CD300LB
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8K4G0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8K4G0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8K4G0
Splice isoforms : SwissVarA8K4G0
PhosPhoSitePlusA8K4G0
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)CD300LB
DMDM Disease mutations124599
Blocks (Seattle)CD300LB
SuperfamilyA8K4G0
Human Protein AtlasENSG00000178789
Peptide AtlasA8K4G0
HPRD18223
IPIIPI00166989   
Protein Interaction databases
DIP (DOE-UCLA)A8K4G0
IntAct (EBI)A8K4G0
FunCoupENSG00000178789
BioGRIDCD300LB
STRING (EMBL)CD300LB
ZODIACCD300LB
Ontologies - Pathways
QuickGOA8K4G0
Ontology : AmiGOplasma membrane  integral component of membrane  innate immune response  regulation of immune response  
Ontology : EGO-EBIplasma membrane  integral component of membrane  innate immune response  regulation of immune response  
NDEx NetworkCD300LB
Atlas of Cancer Signalling NetworkCD300LB
Wikipedia pathwaysCD300LB
Orthology - Evolution
OrthoDB124599
GeneTree (enSembl)ENSG00000178789
Phylogenetic Trees/Animal Genes : TreeFamCD300LB
HOVERGENA8K4G0
HOGENOMA8K4G0
Homologs : HomoloGeneCD300LB
Homology/Alignments : Family Browser (UCSC)CD300LB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD300LB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD300LB
dbVarCD300LB
ClinVarCD300LB
1000_GenomesCD300LB 
Exome Variant ServerCD300LB
ExAC (Exome Aggregation Consortium)CD300LB (select the gene name)
Genetic variants : HAPMAP124599
Genomic Variants (DGV)CD300LB [DGVbeta]
DECIPHERCD300LB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD300LB 
Mutations
ICGC Data PortalCD300LB 
TCGA Data PortalCD300LB 
Broad Tumor PortalCD300LB
OASIS PortalCD300LB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD300LB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD300LB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD300LB
DgiDB (Drug Gene Interaction Database)CD300LB
DoCM (Curated mutations)CD300LB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD300LB (select a term)
intoGenCD300LB
Cancer3DCD300LB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610705   
Orphanet
MedgenCD300LB
Genetic Testing Registry CD300LB
NextProtA8K4G0 [Medical]
TSGene124599
GENETestsCD300LB
Target ValidationCD300LB
Huge Navigator CD300LB [HugePedia]
snp3D : Map Gene to Disease124599
BioCentury BCIQCD300LB
ClinGenCD300LB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124599
Chemical/Pharm GKB GenePA142672151
Clinical trialCD300LB
Miscellaneous
canSAR (ICR)CD300LB (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD300LB
EVEXCD300LB
GoPubMedCD300LB
iHOPCD300LB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:42:52 CEST 2017

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