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CD300LD (CD300 molecule like family member d)

Identity

Alias (NCBI)CD300D
CLM-4
CLM-5
CMRF35-A4
CMRF35A4
HGNC (Hugo) CD300LD
HGNC Alias symbCMRF35A4
CD300D
HGNC Previous nameCD300 molecule-like family member d
LocusID (NCBI) 100131439
Atlas_Id 61622
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74579365 and ends at 74592283 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD300LD   16848
Cards
Entrez_Gene (NCBI)CD300LD  100131439  CD300 molecule like family member d
AliasesCD300D; CLM-4; CLM-5; CMRF35-A4; 
CMRF35A4
GeneCards (Weizmann)CD300LD
Ensembl hg19 (Hinxton)ENSG00000204345 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204345 [Gene_View]  ENSG00000204345 [Sequence]  chr17:74579365-74592283 [Contig_View]  CD300LD [Vega]
ICGC DataPortalENSG00000204345
TCGA cBioPortalCD300LD
AceView (NCBI)CD300LD
Genatlas (Paris)CD300LD
WikiGenes100131439
SOURCE (Princeton)CD300LD
Genetics Home Reference (NIH)CD300LD
Genomic and cartography
GoldenPath hg38 (UCSC)CD300LD  -     chr17:74579365-74592283 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD300LD  -     17q25.1   [Description]    (hg19-Feb_2009)
GoldenPathCD300LD - 17q25.1 [CytoView hg19]  CD300LD - 17q25.1 [CytoView hg38]
ImmunoBaseENSG00000204345
genome Data Viewer NCBICD300LD [Mapview hg19]  
OMIM616301   
Gene and transcription
Genbank (Entrez)AY358148 EF137868
RefSeq transcript (Entrez)NM_001115152
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD300LD
Alternative Splicing GalleryENSG00000204345
Gene ExpressionCD300LD [ NCBI-GEO ]   CD300LD [ EBI - ARRAY_EXPRESS ]   CD300LD [ SEEK ]   CD300LD [ MEM ]
Gene Expression Viewer (FireBrowse)CD300LD [ Firebrowse - Broad ]
GenevisibleExpression of CD300LD in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100131439
GTEX Portal (Tissue expression)CD300LD
Human Protein AtlasENSG00000204345-CD300LD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXZ3
Splice isoforms : SwissVarQ6UXZ3
PhosPhoSitePlusQ6UXZ3
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)CD300LD
DMDM Disease mutations100131439
Blocks (Seattle)CD300LD
SuperfamilyQ6UXZ3
Human Protein Atlas [tissue]ENSG00000204345-CD300LD [tissue]
Peptide AtlasQ6UXZ3
IPIIPI00432782   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXZ3
IntAct (EBI)Q6UXZ3
FunCoupENSG00000204345
BioGRIDCD300LD
STRING (EMBL)CD300LD
ZODIACCD300LD
Ontologies - Pathways
QuickGOQ6UXZ3
Ontology : AmiGOimmune system process  protein binding  plasma membrane  integral component of membrane  regulation of immune response  
Ontology : EGO-EBIimmune system process  protein binding  plasma membrane  integral component of membrane  regulation of immune response  
NDEx NetworkCD300LD
Atlas of Cancer Signalling NetworkCD300LD
Wikipedia pathwaysCD300LD
Orthology - Evolution
OrthoDB100131439
GeneTree (enSembl)ENSG00000204345
Phylogenetic Trees/Animal Genes : TreeFamCD300LD
HOGENOMQ6UXZ3
Homologs : HomoloGeneCD300LD
Homology/Alignments : Family Browser (UCSC)CD300LD
Gene fusions - Rearrangements
Fusion : QuiverCD300LD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD300LD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD300LD
dbVarCD300LD
ClinVarCD300LD
1000_GenomesCD300LD 
Exome Variant ServerCD300LD
GNOMAD BrowserENSG00000204345
Varsome BrowserCD300LD
Genetic variants : HAPMAP100131439
Genomic Variants (DGV)CD300LD [DGVbeta]
DECIPHERCD300LD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD300LD 
Mutations
ICGC Data PortalCD300LD 
TCGA Data PortalCD300LD 
Broad Tumor PortalCD300LD
OASIS PortalCD300LD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD300LD  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCD300LD
Mutations and Diseases : HGMDCD300LD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD300LD
DgiDB (Drug Gene Interaction Database)CD300LD
DoCM (Curated mutations)CD300LD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD300LD (select a term)
intoGenCD300LD
Cancer3DCD300LD(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616301   
Orphanet
DisGeNETCD300LD
MedgenCD300LD
Genetic Testing Registry CD300LD
NextProtQ6UXZ3 [Medical]
TSGene100131439
GENETestsCD300LD
Target ValidationCD300LD
Huge Navigator CD300LD [HugePedia]
snp3D : Map Gene to Disease100131439
BioCentury BCIQCD300LD
ClinGenCD300LD
Clinical trials, drugs, therapy
Protein Interactions : CTD100131439
Pharm GKB GenePA162382124
Clinical trialCD300LD
Miscellaneous
canSAR (ICR)CD300LD (select the gene name)
HarmonizomeCD300LD
DataMed IndexCD300LD
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD300LD
EVEXCD300LD
GoPubMedCD300LD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:08:12 CEST 2020

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