Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CD300LF (CD300 molecule like family member f)

Identity

Alias (NCBI)CD300f
CLM-1
CLM1
IREM-1
IREM1
IgSF13
LMIR3
NKIR
HGNC (Hugo) CD300LF
HGNC Alias symbIREM1
NKIR
IGSF13
CD300f
CLM1
HGNC Previous nameCD300 antigen like family member F
 CD300 molecule-like family member f
LocusID (NCBI) 146722
Atlas_Id 61623
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74694309 and ends at 74713000 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CD300LF   29883
Cards
Entrez_Gene (NCBI)CD300LF    CD300 molecule like family member f
AliasesCD300f; CLM-1; CLM1; IREM-1; 
IREM1; IgSF13; LMIR3; NKIR
GeneCards (Weizmann)CD300LF
Ensembl hg19 (Hinxton)ENSG00000186074 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186074 [Gene_View]  ENSG00000186074 [Sequence]  chr17:74694309-74713000 [Contig_View]  CD300LF [Vega]
ICGC DataPortalENSG00000186074
TCGA cBioPortalCD300LF
AceView (NCBI)CD300LF
Genatlas (Paris)CD300LF
SOURCE (Princeton)CD300LF
Genetics Home Reference (NIH)CD300LF
Genomic and cartography
GoldenPath hg38 (UCSC)CD300LF  -     chr17:74694309-74713000 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD300LF  -     17q25.1   [Description]    (hg19-Feb_2009)
GoldenPathCD300LF - 17q25.1 [CytoView hg19]  CD300LF - 17q25.1 [CytoView hg38]
ImmunoBaseENSG00000186074
genome Data Viewer NCBICD300LF [Mapview hg19]  
OMIM609807   
Gene and transcription
Genbank (Entrez)AF251706 AF375480 AF375481 AK092757 AK298752
RefSeq transcript (Entrez)NM_001289082 NM_001289083 NM_001289084 NM_001289085 NM_001289086 NM_001289087 NM_139018
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD300LF
Alternative Splicing GalleryENSG00000186074
Gene ExpressionCD300LF [ NCBI-GEO ]   CD300LF [ EBI - ARRAY_EXPRESS ]   CD300LF [ SEEK ]   CD300LF [ MEM ]
Gene Expression Viewer (FireBrowse)CD300LF [ Firebrowse - Broad ]
GenevisibleExpression of CD300LF in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146722
GTEX Portal (Tissue expression)CD300LF
Human Protein AtlasENSG00000186074-CD300LF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDQ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDQ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDQ1
Splice isoforms : SwissVarQ8TDQ1
PhosPhoSitePlusQ8TDQ1
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)CD300LF
Blocks (Seattle)CD300LF
PDB (RSDB)2NMS   
PDB Europe2NMS   
PDB (PDBSum)2NMS   
PDB (IMB)2NMS   
Structural Biology KnowledgeBase2NMS   
SCOP (Structural Classification of Proteins)2NMS   
CATH (Classification of proteins structures)2NMS   
SuperfamilyQ8TDQ1
Human Protein Atlas [tissue]ENSG00000186074-CD300LF [tissue]
Peptide AtlasQ8TDQ1
HPRD17635
IPIIPI00419649   IPI00651716   IPI00385550   IPI00182205   IPI00167988   IPI00783431   IPI00943164   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDQ1
IntAct (EBI)Q8TDQ1
BioGRIDCD300LF
STRING (EMBL)CD300LF
ZODIACCD300LF
Ontologies - Pathways
QuickGOQ8TDQ1
Ontology : AmiGOphosphatidylserine binding  interleukin-4 receptor binding  plasma membrane  integral component of membrane  negative regulation of mast cell activation  negative regulation of MyD88-dependent toll-like receptor signaling pathway  TRIF-dependent toll-like receptor signaling pathway  interleukin-13-mediated signaling pathway  regulation of immune response  ceramide binding  positive regulation of interleukin-4-mediated signaling pathway  negative regulation of apoptotic cell clearance  positive regulation of apoptotic cell clearance  
Ontology : EGO-EBIphosphatidylserine binding  interleukin-4 receptor binding  plasma membrane  integral component of membrane  negative regulation of mast cell activation  negative regulation of MyD88-dependent toll-like receptor signaling pathway  TRIF-dependent toll-like receptor signaling pathway  interleukin-13-mediated signaling pathway  regulation of immune response  ceramide binding  positive regulation of interleukin-4-mediated signaling pathway  negative regulation of apoptotic cell clearance  positive regulation of apoptotic cell clearance  
NDEx NetworkCD300LF
Atlas of Cancer Signalling NetworkCD300LF
Wikipedia pathwaysCD300LF
Orthology - Evolution
OrthoDB146722
GeneTree (enSembl)ENSG00000186074
Phylogenetic Trees/Animal Genes : TreeFamCD300LF
HOGENOMQ8TDQ1
Homologs : HomoloGeneCD300LF
Homology/Alignments : Family Browser (UCSC)CD300LF
Gene fusions - Rearrangements
Fusion : QuiverCD300LF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD300LF [hg38]
dbVarCD300LF
ClinVarCD300LF
MonarchCD300LF
1000_GenomesCD300LF 
Exome Variant ServerCD300LF
GNOMAD BrowserENSG00000186074
Varsome BrowserCD300LF
Genomic Variants (DGV)CD300LF [DGVbeta]
DECIPHERCD300LF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD300LF 
Mutations
ICGC Data PortalCD300LF 
TCGA Data PortalCD300LF 
Broad Tumor PortalCD300LF
OASIS PortalCD300LF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD300LF  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCD300LF
Mutations and Diseases : HGMDCD300LF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD300LF
DgiDB (Drug Gene Interaction Database)CD300LF
DoCM (Curated mutations)CD300LF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD300LF (select a term)
intoGenCD300LF
Cancer3DCD300LF(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609807   
Orphanet
DisGeNETCD300LF
MedgenCD300LF
Genetic Testing Registry CD300LF
NextProtQ8TDQ1 [Medical]
GENETestsCD300LF
Target ValidationCD300LF
Huge Navigator CD300LF [HugePedia]
ClinGenCD300LF
Clinical trials, drugs, therapy
MyCancerGenomeCD300LF
Protein Interactions : CTD
Pharm GKB GenePA142672153
Clinical trialCD300LF
Miscellaneous
canSAR (ICR)CD300LF (select the gene name)
HarmonizomeCD300LF
DataMed IndexCD300LF
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD300LF
EVEXCD300LF
GoPubMedCD300LF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:49:22 CET 2020
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