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CD300LF (CD300 molecule like family member f)

Identity

Alias_namesCD300 antigen like family member F
CD300 molecule-like family member f
Alias_symbol (synonym)IREM1
NKIR
IGSF13
CD300f
CLM1
Other aliasCLM-1
IREM-1
IgSF13
LMIR3
HGNC (Hugo) CD300LF
LocusID (NCBI) 146722
Atlas_Id 61623
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74694309 and ends at 74713000 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD300LF   29883
Cards
Entrez_Gene (NCBI)CD300LF  146722  CD300 molecule like family member f
AliasesCD300f; CLM-1; CLM1; IREM-1; 
IREM1; IgSF13; LMIR3; NKIR
GeneCards (Weizmann)CD300LF
Ensembl hg19 (Hinxton)ENSG00000186074 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186074 [Gene_View]  chr17:74694309-74713000 [Contig_View]  CD300LF [Vega]
ICGC DataPortalENSG00000186074
TCGA cBioPortalCD300LF
AceView (NCBI)CD300LF
Genatlas (Paris)CD300LF
WikiGenes146722
SOURCE (Princeton)CD300LF
Genetics Home Reference (NIH)CD300LF
Genomic and cartography
GoldenPath hg38 (UCSC)CD300LF  -     chr17:74694309-74713000 -  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD300LF  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblCD300LF - 17q25.1 [CytoView hg19]  CD300LF - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBICD300LF [Mapview hg19]  CD300LF [Mapview hg38]
OMIM609807   
Gene and transcription
Genbank (Entrez)AF251706 AF375480 AF375481 AK092757 AK298752
RefSeq transcript (Entrez)NM_001289082 NM_001289083 NM_001289084 NM_001289085 NM_001289086 NM_001289087 NM_139018
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD300LF
Cluster EST : UnigeneHs.567706 [ NCBI ]
CGAP (NCI)Hs.567706
Alternative Splicing GalleryENSG00000186074
Gene ExpressionCD300LF [ NCBI-GEO ]   CD300LF [ EBI - ARRAY_EXPRESS ]   CD300LF [ SEEK ]   CD300LF [ MEM ]
Gene Expression Viewer (FireBrowse)CD300LF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146722
GTEX Portal (Tissue expression)CD300LF
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDQ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDQ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDQ1
Splice isoforms : SwissVarQ8TDQ1
PhosPhoSitePlusQ8TDQ1
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)CD300LF
DMDM Disease mutations146722
Blocks (Seattle)CD300LF
PDB (SRS)2NMS   
PDB (PDBSum)2NMS   
PDB (IMB)2NMS   
PDB (RSDB)2NMS   
Structural Biology KnowledgeBase2NMS   
SCOP (Structural Classification of Proteins)2NMS   
CATH (Classification of proteins structures)2NMS   
SuperfamilyQ8TDQ1
Human Protein AtlasENSG00000186074
Peptide AtlasQ8TDQ1
HPRD17635
IPIIPI00419649   IPI00651716   IPI00385550   IPI00182205   IPI00167988   IPI00783431   IPI00943164   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDQ1
IntAct (EBI)Q8TDQ1
FunCoupENSG00000186074
BioGRIDCD300LF
STRING (EMBL)CD300LF
ZODIACCD300LF
Ontologies - Pathways
QuickGOQ8TDQ1
Ontology : AmiGOphosphatidylserine binding  interleukin-4 receptor binding  plasma membrane  integral component of membrane  negative regulation of mast cell activation  negative regulation of MyD88-dependent toll-like receptor signaling pathway  TRIF-dependent toll-like receptor signaling pathway  interleukin-13-mediated signaling pathway  regulation of immune response  ceramide binding  positive regulation of interleukin-4-mediated signaling pathway  negative regulation of apoptotic cell clearance  positive regulation of apoptotic cell clearance  
Ontology : EGO-EBIphosphatidylserine binding  interleukin-4 receptor binding  plasma membrane  integral component of membrane  negative regulation of mast cell activation  negative regulation of MyD88-dependent toll-like receptor signaling pathway  TRIF-dependent toll-like receptor signaling pathway  interleukin-13-mediated signaling pathway  regulation of immune response  ceramide binding  positive regulation of interleukin-4-mediated signaling pathway  negative regulation of apoptotic cell clearance  positive regulation of apoptotic cell clearance  
NDEx NetworkCD300LF
Atlas of Cancer Signalling NetworkCD300LF
Wikipedia pathwaysCD300LF
Orthology - Evolution
OrthoDB146722
GeneTree (enSembl)ENSG00000186074
Phylogenetic Trees/Animal Genes : TreeFamCD300LF
HOVERGENQ8TDQ1
HOGENOMQ8TDQ1
Homologs : HomoloGeneCD300LF
Homology/Alignments : Family Browser (UCSC)CD300LF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD300LF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD300LF
dbVarCD300LF
ClinVarCD300LF
1000_GenomesCD300LF 
Exome Variant ServerCD300LF
ExAC (Exome Aggregation Consortium)CD300LF (select the gene name)
Genetic variants : HAPMAP146722
Genomic Variants (DGV)CD300LF [DGVbeta]
DECIPHERCD300LF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD300LF 
Mutations
ICGC Data PortalCD300LF 
TCGA Data PortalCD300LF 
Broad Tumor PortalCD300LF
OASIS PortalCD300LF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD300LF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD300LF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD300LF
DgiDB (Drug Gene Interaction Database)CD300LF
DoCM (Curated mutations)CD300LF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD300LF (select a term)
intoGenCD300LF
Cancer3DCD300LF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609807   
Orphanet
MedgenCD300LF
Genetic Testing Registry CD300LF
NextProtQ8TDQ1 [Medical]
TSGene146722
GENETestsCD300LF
Target ValidationCD300LF
Huge Navigator CD300LF [HugePedia]
snp3D : Map Gene to Disease146722
BioCentury BCIQCD300LF
ClinGenCD300LF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146722
Chemical/Pharm GKB GenePA142672153
Clinical trialCD300LF
Miscellaneous
canSAR (ICR)CD300LF (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD300LF
EVEXCD300LF
GoPubMedCD300LF
iHOPCD300LF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Aug 1 16:11:56 CEST 2017

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