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CD300LG (CD300 molecule like family member g)

Identity

Alias (NCBI)CLM-9
CLM9
NEPMUCIN
TREM-4
TREM4
HGNC (Hugo) CD300LG
HGNC Alias symbTrem4
CLM9
HGNC Alias namenepmucin
HGNC Previous nameCD300 antigen like family member G
 CD300 molecule-like family member g
LocusID (NCBI) 146894
Atlas_Id 56881
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 43847176 and ends at 43863639 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)CD300LG   30455
Cards
Entrez_Gene (NCBI)CD300LG    CD300 molecule like family member g
AliasesCLM-9; CLM9; NEPMUCIN; TREM-4; 
TREM4
GeneCards (Weizmann)CD300LG
Ensembl hg19 (Hinxton)ENSG00000161649 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161649 [Gene_View]  ENSG00000161649 [Sequence]  chr17:43847176-43863639 [Contig_View]  CD300LG [Vega]
ICGC DataPortalENSG00000161649
TCGA cBioPortalCD300LG
AceView (NCBI)CD300LG
Genatlas (Paris)CD300LG
SOURCE (Princeton)CD300LG
Genetics Home Reference (NIH)CD300LG
Genomic and cartography
GoldenPath hg38 (UCSC)CD300LG  -     chr17:43847176-43863639 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD300LG  -     17q21.31   [Description]    (hg19-Feb_2009)
GoldenPathCD300LG - 17q21.31 [CytoView hg19]  CD300LG - 17q21.31 [CytoView hg38]
ImmunoBaseENSG00000161649
Genome Data Viewer NCBICD300LG [Mapview hg19]  
OMIM610520   
Gene and transcription
Genbank (Entrez)AF427619 AF427620 AK298112 AK309938 AY358364
RefSeq transcript (Entrez)NM_001168322 NM_001168323 NM_001168324 NM_145273
Consensus coding sequences : CCDS (NCBI)CD300LG
Gene ExpressionCD300LG [ NCBI-GEO ]   CD300LG [ EBI - ARRAY_EXPRESS ]   CD300LG [ SEEK ]   CD300LG [ MEM ]
Gene Expression Viewer (FireBrowse)CD300LG [ Firebrowse - Broad ]
GenevisibleExpression of CD300LG in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146894
GTEX Portal (Tissue expression)CD300LG
Human Protein AtlasENSG00000161649-CD300LG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXG3
PhosPhoSitePlusQ6UXG3
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)CD300LG
SuperfamilyQ6UXG3
AlphaFold pdb e-kbQ6UXG3   
Human Protein Atlas [tissue]ENSG00000161649-CD300LG [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q6UXG3
IntAct (EBI)Q6UXG3
BioGRIDCD300LG
STRING (EMBL)CD300LG
ZODIACCD300LG
Ontologies - Pathways
QuickGOQ6UXG3
Ontology : AmiGOimmune system process  transmembrane signaling receptor activity  protein binding  plasma membrane  plasma membrane  integral component of membrane  basolateral plasma membrane  apical plasma membrane  multivesicular body membrane  regulation of immune response  
Ontology : EGO-EBIimmune system process  transmembrane signaling receptor activity  protein binding  plasma membrane  plasma membrane  integral component of membrane  basolateral plasma membrane  apical plasma membrane  multivesicular body membrane  regulation of immune response  
NDEx NetworkCD300LG
Atlas of Cancer Signalling NetworkCD300LG
Wikipedia pathwaysCD300LG
Orthology - Evolution
OrthoDB146894
GeneTree (enSembl)ENSG00000161649
Phylogenetic Trees/Animal Genes : TreeFamCD300LG
Homologs : HomoloGeneCD300LG
Homology/Alignments : Family Browser (UCSC)CD300LG
Gene fusions - Rearrangements
Fusion : QuiverCD300LG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD300LG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD300LG
dbVarCD300LG
ClinVarCD300LG
MonarchCD300LG
1000_GenomesCD300LG 
Exome Variant ServerCD300LG
GNOMAD BrowserENSG00000161649
Varsome BrowserCD300LG
ACMGCD300LG variants
VarityQ6UXG3
Genomic Variants (DGV)CD300LG [DGVbeta]
DECIPHERCD300LG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD300LG 
Mutations
ICGC Data PortalCD300LG 
TCGA Data PortalCD300LG 
Broad Tumor PortalCD300LG
OASIS PortalCD300LG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD300LG  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCD300LG
Mutations and Diseases : HGMDCD300LG
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaCD300LG
DgiDB (Drug Gene Interaction Database)CD300LG
DoCM (Curated mutations)CD300LG
CIViC (Clinical Interpretations of Variants in Cancer)CD300LG
Cancer3DCD300LG
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610520   
Orphanet
DisGeNETCD300LG
MedgenCD300LG
Genetic Testing Registry CD300LG
NextProtQ6UXG3 [Medical]
GENETestsCD300LG
Target ValidationCD300LG
Huge Navigator CD300LG [HugePedia]
ClinGenCD300LG
Clinical trials, drugs, therapy
MyCancerGenomeCD300LG
Protein Interactions : CTDCD300LG
Pharm GKB GenePA142672154
PharosQ6UXG3
Clinical trialCD300LG
Miscellaneous
canSAR (ICR)CD300LG
HarmonizomeCD300LG
DataMed IndexCD300LG
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCD300LG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:02:57 CEST 2021

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