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CD300LG (CD300 molecule like family member g)

Identity

Other aliasCLM-9
CLM9
NEPMUCIN
TREM-4
TREM4
HGNC (Hugo) CD300LG
LocusID (NCBI) 146894
Atlas_Id 56881
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 43847148 and ends at 43858234 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD300LG   30455
Cards
Entrez_Gene (NCBI)CD300LG  146894  CD300 molecule like family member g
AliasesCLM-9; CLM9; NEPMUCIN; TREM-4; 
TREM4
GeneCards (Weizmann)CD300LG
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:43847148-43858234 [Contig_View]  CD300LG [Vega]
TCGA cBioPortalCD300LG
AceView (NCBI)CD300LG
Genatlas (Paris)CD300LG
WikiGenes146894
SOURCE (Princeton)CD300LG
Genetics Home Reference (NIH)CD300LG
Genomic and cartography
GoldenPath hg38 (UCSC)CD300LG  -     chr17:43847148-43858234 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD300LG  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblCD300LG - 17q21.31 [CytoView hg19]  CD300LG - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBICD300LG [Mapview hg19]  CD300LG [Mapview hg38]
OMIM610520   
Gene and transcription
Genbank (Entrez)AF427619 AF427620 AK298112 AK309938 AY358364
RefSeq transcript (Entrez)NM_001168322 NM_001168323 NM_001168324 NM_145273
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD300LG
Cluster EST : UnigeneHs.147313 [ NCBI ]
CGAP (NCI)Hs.147313
Gene ExpressionCD300LG [ NCBI-GEO ]   CD300LG [ EBI - ARRAY_EXPRESS ]   CD300LG [ SEEK ]   CD300LG [ MEM ]
Gene Expression Viewer (FireBrowse)CD300LG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146894
GTEX Portal (Tissue expression)CD300LG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UXG3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UXG3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UXG3
Splice isoforms : SwissVarQ6UXG3
PhosPhoSitePlusQ6UXG3
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)CD300LG
DMDM Disease mutations146894
Blocks (Seattle)CD300LG
SuperfamilyQ6UXG3
Peptide AtlasQ6UXG3
IPIIPI00152018   IPI00217385   IPI00741892   IPI00954596   IPI00910975   
Protein Interaction databases
DIP (DOE-UCLA)Q6UXG3
IntAct (EBI)Q6UXG3
BioGRIDCD300LG
STRING (EMBL)CD300LG
ZODIACCD300LG
Ontologies - Pathways
QuickGOQ6UXG3
Ontology : AmiGOIgM binding  immune system process  immunoglobulin transcytosis in epithelial cells  protein binding  plasma membrane  integral component of membrane  basolateral plasma membrane  apical plasma membrane  multivesicular body membrane  regulation of immune response  extracellular exosome  
Ontology : EGO-EBIIgM binding  immune system process  immunoglobulin transcytosis in epithelial cells  protein binding  plasma membrane  integral component of membrane  basolateral plasma membrane  apical plasma membrane  multivesicular body membrane  regulation of immune response  extracellular exosome  
NDEx NetworkCD300LG
Atlas of Cancer Signalling NetworkCD300LG
Wikipedia pathwaysCD300LG
Orthology - Evolution
OrthoDB146894
Phylogenetic Trees/Animal Genes : TreeFamCD300LG
HOVERGENQ6UXG3
HOGENOMQ6UXG3
Homologs : HomoloGeneCD300LG
Homology/Alignments : Family Browser (UCSC)CD300LG
Gene fusions - Rearrangements
Tumor Fusion PortalCD300LG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD300LG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD300LG
dbVarCD300LG
ClinVarCD300LG
1000_GenomesCD300LG 
Exome Variant ServerCD300LG
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP146894
Genomic Variants (DGV)CD300LG [DGVbeta]
DECIPHERCD300LG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD300LG 
Mutations
ICGC Data PortalCD300LG 
TCGA Data PortalCD300LG 
Broad Tumor PortalCD300LG
OASIS PortalCD300LG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD300LG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD300LG
BioMutasearch CD300LG
DgiDB (Drug Gene Interaction Database)CD300LG
DoCM (Curated mutations)CD300LG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD300LG (select a term)
intoGenCD300LG
Cancer3DCD300LG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610520   
Orphanet
DisGeNETCD300LG
MedgenCD300LG
Genetic Testing Registry CD300LG
NextProtQ6UXG3 [Medical]
TSGene146894
GENETestsCD300LG
Target ValidationCD300LG
Huge Navigator CD300LG [HugePedia]
snp3D : Map Gene to Disease146894
BioCentury BCIQCD300LG
ClinGenCD300LG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146894
Chemical/Pharm GKB GenePA142672154
Clinical trialCD300LG
Miscellaneous
canSAR (ICR)CD300LG (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD300LG
EVEXCD300LG
GoPubMedCD300LG
iHOPCD300LG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 14:06:43 CET 2017

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