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CD302 (CD302 molecule)

Identity

Alias_namesmember A
Alias_symbol (synonym)DCL-1
KIAA0022
BIMLEC
CLEC13A
Other aliasDCL1
HGNC (Hugo) CD302
LocusID (NCBI) 9936
Atlas_Id 45627
Location 2q24.2  [Link to chromosome band 2q24]
Location_base_pair Starts at 159768628 and ends at 159798255 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD302 (2q24.2) / ALPL (1p36.12)CD302 2q24.2 / ALPL 1p36.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;2)(p36;q24) CD302/ALPL


External links

Nomenclature
HGNC (Hugo)CD302   30843
Cards
Entrez_Gene (NCBI)CD302  9936  CD302 molecule
AliasesBIMLEC; CLEC13A; DCL-1; DCL1
GeneCards (Weizmann)CD302
Ensembl hg19 (Hinxton)ENSG00000241399 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241399 [Gene_View]  ENSG00000241399 [Sequence]  chr2:159768628-159798255 [Contig_View]  CD302 [Vega]
ICGC DataPortalENSG00000241399
TCGA cBioPortalCD302
AceView (NCBI)CD302
Genatlas (Paris)CD302
WikiGenes9936
SOURCE (Princeton)CD302
Genetics Home Reference (NIH)CD302
Genomic and cartography
GoldenPath hg38 (UCSC)CD302  -     chr2:159768628-159798255 -  2q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD302  -     2q24.2   [Description]    (hg19-Feb_2009)
EnsemblCD302 - 2q24.2 [CytoView hg19]  CD302 - 2q24.2 [CytoView hg38]
Mapping of homologs : NCBICD302 [Mapview hg19]  CD302 [Mapview hg38]
OMIM612246   
Gene and transcription
Genbank (Entrez)AF499000 AK125081 AK291279 AK304422 AY314007
RefSeq transcript (Entrez)NM_001198763 NM_001198764 NM_014880
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD302
Cluster EST : UnigeneHs.153563 [ NCBI ]
CGAP (NCI)Hs.153563
Alternative Splicing GalleryENSG00000241399
Gene ExpressionCD302 [ NCBI-GEO ]   CD302 [ EBI - ARRAY_EXPRESS ]   CD302 [ SEEK ]   CD302 [ MEM ]
Gene Expression Viewer (FireBrowse)CD302 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9936
GTEX Portal (Tissue expression)CD302
Human Protein AtlasENSG00000241399-CD302 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IX05   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IX05  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IX05
Splice isoforms : SwissVarQ8IX05
PhosPhoSitePlusQ8IX05
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link_sf    CTDL_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CD302
DMDM Disease mutations9936
Blocks (Seattle)CD302
PDB (SRS)2NAN   
PDB (PDBSum)2NAN   
PDB (IMB)2NAN   
PDB (RSDB)2NAN   
Structural Biology KnowledgeBase2NAN   
SCOP (Structural Classification of Proteins)2NAN   
CATH (Classification of proteins structures)2NAN   
SuperfamilyQ8IX05
Human Protein Atlas [tissue]ENSG00000241399-CD302 [tissue]
Peptide AtlasQ8IX05
HPRD09906
IPIIPI00217343   IPI00909410   IPI00975529   
Protein Interaction databases
DIP (DOE-UCLA)Q8IX05
IntAct (EBI)Q8IX05
FunCoupENSG00000241399
BioGRIDCD302
STRING (EMBL)CD302
ZODIACCD302
Ontologies - Pathways
QuickGOQ8IX05
Ontology : AmiGOmicrovillus  cell cortex  phagocytosis  membrane  integral component of membrane  filopodium  carbohydrate binding  
Ontology : EGO-EBImicrovillus  cell cortex  phagocytosis  membrane  integral component of membrane  filopodium  carbohydrate binding  
NDEx NetworkCD302
Atlas of Cancer Signalling NetworkCD302
Wikipedia pathwaysCD302
Orthology - Evolution
OrthoDB9936
GeneTree (enSembl)ENSG00000241399
Phylogenetic Trees/Animal Genes : TreeFamCD302
HOVERGENQ8IX05
HOGENOMQ8IX05
Homologs : HomoloGeneCD302
Homology/Alignments : Family Browser (UCSC)CD302
Gene fusions - Rearrangements
Fusion : MitelmanCD302/ALPL [2q24.2/1p36.12]  
Fusion PortalCD302 2q24.2 ALPL 1p36.12 BRCA
Fusion : QuiverCD302
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD302 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD302
dbVarCD302
ClinVarCD302
1000_GenomesCD302 
Exome Variant ServerCD302
ExAC (Exome Aggregation Consortium)ENSG00000241399
GNOMAD BrowserENSG00000241399
Varsome BrowserCD302
Genetic variants : HAPMAP9936
Genomic Variants (DGV)CD302 [DGVbeta]
DECIPHERCD302 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD302 
Mutations
ICGC Data PortalCD302 
TCGA Data PortalCD302 
Broad Tumor PortalCD302
OASIS PortalCD302 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD302  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD302
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD302
DgiDB (Drug Gene Interaction Database)CD302
DoCM (Curated mutations)CD302 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD302 (select a term)
intoGenCD302
Cancer3DCD302(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612246   
Orphanet
DisGeNETCD302
MedgenCD302
Genetic Testing Registry CD302
NextProtQ8IX05 [Medical]
TSGene9936
GENETestsCD302
Target ValidationCD302
Huge Navigator CD302 [HugePedia]
snp3D : Map Gene to Disease9936
BioCentury BCIQCD302
ClinGenCD302
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9936
Chemical/Pharm GKB GenePA142672141
Clinical trialCD302
Miscellaneous
canSAR (ICR)CD302 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD302
EVEXCD302
GoPubMedCD302
iHOPCD302
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 10:56:47 CET 2018

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