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CD37 (CD37 molecule)

Identity

Alias_namesCD37 antigen
Alias_symbol (synonym)TSPAN26
Other aliasGP52-40
HGNC (Hugo) CD37
LocusID (NCBI) 951
Atlas_Id 977
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49335420 and ends at 49340604 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC106 (19q13.42) / CD37 (19q13.33)CD37 (19q13.33) / MIR29B2 (1q32.2)MAP3K13 (3q27.2) / CD37 (19q13.33)
MCFD2 (2p21) / CD37 (19q13.33)MIR29B2 (1q32.2) / CD37 (19q13.33)CCDC106 19q13.42 / CD37 19q13.33
MAP3K13 3q27.2 / CD37 19q13.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD37   1666
Cards
Entrez_Gene (NCBI)CD37  951  CD37 molecule
AliasesGP52-40; TSPAN26
GeneCards (Weizmann)CD37
Ensembl hg19 (Hinxton)ENSG00000104894 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104894 [Gene_View]  chr19:49335420-49340604 [Contig_View]  CD37 [Vega]
ICGC DataPortalENSG00000104894
TCGA cBioPortalCD37
AceView (NCBI)CD37
Genatlas (Paris)CD37
WikiGenes951
SOURCE (Princeton)CD37
Genetics Home Reference (NIH)CD37
Genomic and cartography
GoldenPath hg38 (UCSC)CD37  -     chr19:49335420-49340604 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD37  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblCD37 - 19q13.33 [CytoView hg19]  CD37 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBICD37 [Mapview hg19]  CD37 [Mapview hg38]
OMIM151523   
Gene and transcription
Genbank (Entrez)AA767248 AK058093 AK301016 AK301328 AK316348
RefSeq transcript (Entrez)NM_001040031 NM_001774
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD37
Cluster EST : UnigeneHs.166556 [ NCBI ]
CGAP (NCI)Hs.166556
Alternative Splicing GalleryENSG00000104894
Gene ExpressionCD37 [ NCBI-GEO ]   CD37 [ EBI - ARRAY_EXPRESS ]   CD37 [ SEEK ]   CD37 [ MEM ]
Gene Expression Viewer (FireBrowse)CD37 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)951
GTEX Portal (Tissue expression)CD37
Protein : pattern, domain, 3D structure
UniProt/SwissProtP11049   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP11049  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP11049
Splice isoforms : SwissVarP11049
PhosPhoSitePlusP11049
Domaine pattern : Prosite (Expaxy)TM4_1 (PS00421)   
Domains : Interpro (EBI)Tetraspanin    Tetraspanin/Peripherin    Tetraspanin_CS    Tetraspanin_EC2   
Domain families : Pfam (Sanger)Tetraspannin (PF00335)   
Domain families : Pfam (NCBI)pfam00335   
Conserved Domain (NCBI)CD37
DMDM Disease mutations951
Blocks (Seattle)CD37
SuperfamilyP11049
Human Protein AtlasENSG00000104894
Peptide AtlasP11049
HPRD01053
IPIIPI00003400   IPI00910035   IPI00157380   IPI00748062   
Protein Interaction databases
DIP (DOE-UCLA)P11049
IntAct (EBI)P11049
FunCoupENSG00000104894
BioGRIDCD37
STRING (EMBL)CD37
ZODIACCD37
Ontologies - Pathways
QuickGOP11049
Ontology : AmiGOimmunological synapse  protein binding  integral component of plasma membrane  cell surface receptor signaling pathway  membrane  extracellular exosome  
Ontology : EGO-EBIimmunological synapse  protein binding  integral component of plasma membrane  cell surface receptor signaling pathway  membrane  extracellular exosome  
Pathways : KEGGHematopoietic cell lineage   
NDEx NetworkCD37
Atlas of Cancer Signalling NetworkCD37
Wikipedia pathwaysCD37
Orthology - Evolution
OrthoDB951
GeneTree (enSembl)ENSG00000104894
Phylogenetic Trees/Animal Genes : TreeFamCD37
HOVERGENP11049
HOGENOMP11049
Homologs : HomoloGeneCD37
Homology/Alignments : Family Browser (UCSC)CD37
Gene fusions - Rearrangements
Fusion : MitelmanCCDC106/CD37 [19q13.42/19q13.33]  [t(19;19)(q13;q13)]  
Fusion : MitelmanMAP3K13/CD37 [3q27.2/19q13.33]  [t(3;19)(q27;q13)]  
Fusion: TCGACCDC106 19q13.42 CD37 19q13.33 BRCA
Fusion: TCGAMAP3K13 3q27.2 CD37 19q13.33 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD37 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD37
dbVarCD37
ClinVarCD37
1000_GenomesCD37 
Exome Variant ServerCD37
ExAC (Exome Aggregation Consortium)CD37 (select the gene name)
Genetic variants : HAPMAP951
Genomic Variants (DGV)CD37 [DGVbeta]
DECIPHERCD37 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD37 
Mutations
ICGC Data PortalCD37 
TCGA Data PortalCD37 
Broad Tumor PortalCD37
OASIS PortalCD37 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD37  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD37
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD37
DgiDB (Drug Gene Interaction Database)CD37
DoCM (Curated mutations)CD37 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD37 (select a term)
intoGenCD37
Cancer3DCD37(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM151523   
Orphanet
MedgenCD37
Genetic Testing Registry CD37
NextProtP11049 [Medical]
TSGene951
GENETestsCD37
Target ValidationCD37
Huge Navigator CD37 [HugePedia]
snp3D : Map Gene to Disease951
BioCentury BCIQCD37
ClinGenCD37
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD951
Chemical/Pharm GKB GenePA26213
Clinical trialCD37
Miscellaneous
canSAR (ICR)CD37 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD37
EVEXCD37
GoPubMedCD37
iHOPCD37
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:27:26 CEST 2017

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