Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CD47 (CD47 molecule)

Identity

Other namesIAP
MER6
OA3
HGNC (Hugo) CD47
LocusID (NCBI) 961
Location 3q13.12
Location_base_pair Starts at 107761941 and ends at 107809935 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CD47   1682
Entrez_Gene (NCBI)CD47  961  CD47 molecule
Cards
GeneCards (Weizmann)CD47
Ensembl (Hinxton)ENSG00000196776 [Gene_View]  chr3:107761941-107809935 [Contig_View]  CD47 [Vega]
AceView (NCBI)CD47
Genatlas (Paris)CD47
SOURCE (Stanford)NM_001025079 NM_001025080 NM_001777 NM_198793
Genomic and cartography
GoldenPath (UCSC)CD47  -  3q13.12   chr3:107761941-107809935 -  3q13.12   [Description]    (hg19-Feb_2009)
EnsemblCD47 - 3q13.12 [CytoView]
Mapping of homologs : NCBICD47 [Mapview]
OMIM601028   
Gene and transcription
Genbank (Entrez)AI701980 AK096670 AK124152 AK289813 AL832675
RefSeq transcript (SRS)NM_001025079 NM_001025080 NM_001777 NM_198793
RefSeq transcript (Entrez)NM_001025079 NM_001025080 NM_001777 NM_198793
RefSeq genomic (SRS)AC_000135 NC_000003 NC_018914 NT_005612 NW_001838881 NW_004078013
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_005612 NW_001838881 NW_004078013
Consensus coding sequences : CCDS (NCBI)CD47
Cluster EST : UnigeneHs.446414 [ SRS ] Hs.446414 [ NCBI ]
CGAP (NCI)Hs.446414
Alternative Splicing : Fast-db (Paris)GSHG0021913
Alternative Splicing GalleryENSG00000196776
Gene ExpressionCD47 [ NCBI-GEO ]   CD47 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08722 (SRS) Q08722 (Uniprot)
NextProtQ08722
With graphics : InterProQ08722
Splice isoforms : SwissVarQ08722(Swissvar)
Domaine pattern : Prosite (SRS)IG_LIKE (PS50835)   
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (SRS)CD47    CD47_TM    CD47_Vset    Ig-like    Ig-like_fold   
Domains : Interpro (EBI)CD47    CD47_TM    CD47_Vset    Ig-like    Ig-like_fold   
Related proteins : CluSTrQ08722
Domain families : Pfam (SRS)CD47 (PF04549)    V-set_CD47 (PF08204)   
Domain families : Pfam (Sanger)CD47 (PF04549)    V-set_CD47 (PF08204)   
Domain families : Pfam (NCBI)pfam04549    pfam08204   
DMDM961
Blocks (Seattle)Q08722
PDB (SRS)2JJS    2JJT    2VSC   
PDB (PDBSum)2JJS    2JJT    2VSC   
PDB (IMB)2JJS    2JJT    2VSC   
PDB (RSDB)2JJS    2JJT    2VSC   
Human Protein AtlasENSG00000196776
HPRD03017
IPIIPI00374740   IPI00216514   IPI00872082   IPI00216516   IPI00795679   IPI00983236   
Protein Interaction databases
DIP (DOE-UCLA)Q08722
IntAct (EBI)Q08722
FunCoupENSG00000196776
REACTOMECD47
Protein Interaction Database961
BioGRIDCD47
InParanoidQ08722
Interologous Interaction database Q08722
IntegromeDBCD47
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CD47
SNP (GeneSNP Utah)CD47
SNP : HGBaseCD47
Genetic variants : HAPMAPCD47
Somatic Mutations in Cancer : COSMICCD47 
CONAN: Copy Number AnalysisCD47 
Mutations and Diseases : HGMDCD47
OMIM601028   
GENETests601028   
Disease Genetic AssociationCD47
Huge Navigator CD47 [HugePedia]  CD47 [HugeCancerGEM]
Genomic VariantsCD47  CD47 [DGVbeta]
snp3D : Map Gene to Disease961
General knowledge
Homologs : HomoloGeneCD47
Homology/Alignments : Family Browser (UCSC)CD47
Phylogenetic Trees/Animal Genes : TreeFamCD47
Chemical/Protein Interactions : CTD961
Chemical/Pharm GKB GenePA26222
Clinical trialCD47
Cancer Resource (Charite)ENSG00000196776
Ontology : AmiGOprotein binding  plasma membrane  integral to plasma membrane  cell adhesion  integrin-mediated signaling pathway  blood coagulation  opsonization  positive regulation of cell proliferation  response to bacterium  positive regulation of cell-cell adhesion  positive regulation of inflammatory response  positive regulation of phagocytosis  positive regulation of T cell activation  leukocyte migration  thrombospondin receptor activity  extracellular vesicular exosome  
Ontology : EGO-EBIprotein binding  plasma membrane  integral to plasma membrane  cell adhesion  integrin-mediated signaling pathway  blood coagulation  opsonization  positive regulation of cell proliferation  response to bacterium  positive regulation of cell-cell adhesion  positive regulation of inflammatory response  positive regulation of phagocytosis  positive regulation of T cell activation  leukocyte migration  thrombospondin receptor activity  extracellular vesicular exosome  
Pathways : KEGGECM-receptor interaction
Other databases
Probes
Litterature
PubMed98 Pubmed reference(s) in Entrez
PubGeneCD47
iHOPCD47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:29:09 CEST 2013
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