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CD47 (CD47 molecule)

Identity

Other namesIAP
MER6
OA3
HGNC (Hugo) CD47
LocusID (NCBI) 961
Atlas_Id 981
Location 3q13.12  [Link to chromosome band 3q13]
Location_base_pair Starts at 107761941 and ends at 107809935 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANKRD17 (4q13.3) / CD47 (3q13.12)CD47 (3q13.12) / IGFBP3 (7p12.3)CD47 (3q13.12) / ZFR (5p13.3)
DIP2C (10p15.3) / CD47 (3q13.12)TBC1D1 (4p14) / CD47 (3q13.12)CD47 3q13.12 / ZFR 5p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD47   1682
Cards
Entrez_Gene (NCBI)CD47  961  CD47 molecule
AliasesIAP; MER6; OA3
GeneCards (Weizmann)CD47
Ensembl hg19 (Hinxton)ENSG00000196776 [Gene_View]  chr3:107761941-107809935 [Contig_View]  CD47 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196776 [Gene_View]  chr3:107761941-107809935 [Contig_View]  CD47 [Vega]
ICGC DataPortalENSG00000196776
TCGA cBioPortalCD47
AceView (NCBI)CD47
Genatlas (Paris)CD47
WikiGenes961
SOURCE (Princeton)CD47
Genomic and cartography
GoldenPath hg19 (UCSC)CD47  -     chr3:107761941-107809935 -  3q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CD47  -     3q13.12   [Description]    (hg38-Dec_2013)
EnsemblCD47 - 3q13.12 [CytoView hg19]  CD47 - 3q13.12 [CytoView hg38]
Mapping of homologs : NCBICD47 [Mapview hg19]  CD47 [Mapview hg38]
OMIM601028   
Gene and transcription
Genbank (Entrez)AI701980 AK096670 AK124152 AK289813 AL832675
RefSeq transcript (Entrez)NM_001025079 NM_001025080 NM_001777 NM_198793
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)CD47
Cluster EST : UnigeneHs.446414 [ NCBI ]
CGAP (NCI)Hs.446414
Alternative Splicing GalleryENSG00000196776
Gene ExpressionCD47 [ NCBI-GEO ]   CD47 [ EBI - ARRAY_EXPRESS ]   CD47 [ SEEK ]   CD47 [ MEM ]
Gene Expression Viewer (FireBrowse)CD47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)961
GTEX Portal (Tissue expression)CD47
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08722 (Uniprot)
NextProtQ08722  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08722
Splice isoforms : SwissVarQ08722 (Swissvar)
PhosPhoSitePlusQ08722
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)CD47    CD47_TM    CD47_Vset    Ig-like_dom    Ig-like_fold   
Domain families : Pfam (Sanger)CD47 (PF04549)    V-set_CD47 (PF08204)   
Domain families : Pfam (NCBI)pfam04549    pfam08204   
DMDM Disease mutations961
Blocks (Seattle)CD47
PDB (SRS)2JJS    2JJT    2VSC    4CMM    4KJY   
PDB (PDBSum)2JJS    2JJT    2VSC    4CMM    4KJY   
PDB (IMB)2JJS    2JJT    2VSC    4CMM    4KJY   
PDB (RSDB)2JJS    2JJT    2VSC    4CMM    4KJY   
Structural Biology KnowledgeBase2JJS    2JJT    2VSC    4CMM    4KJY   
SCOP (Structural Classification of Proteins)2JJS    2JJT    2VSC    4CMM    4KJY   
CATH (Classification of proteins structures)2JJS    2JJT    2VSC    4CMM    4KJY   
SuperfamilyQ08722
Human Protein AtlasENSG00000196776
Peptide AtlasQ08722
HPRD03017
IPIIPI00374740   IPI00216514   IPI00872082   IPI00216516   IPI00795679   IPI00983236   
Protein Interaction databases
DIP (DOE-UCLA)Q08722
IntAct (EBI)Q08722
FunCoupENSG00000196776
BioGRIDCD47
STRING (EMBL)CD47
ZODIACCD47
Ontologies - Pathways
QuickGOQ08722
Ontology : AmiGOprotein binding  plasma membrane  integral component of plasma membrane  cell adhesion  integrin-mediated signaling pathway  opsonization  positive regulation of cell proliferation  response to bacterium  positive regulation of cell-cell adhesion  extracellular matrix organization  positive regulation of inflammatory response  positive regulation of phagocytosis  positive regulation of T cell activation  leukocyte migration  thrombospondin receptor activity  extracellular exosome  
Ontology : EGO-EBIprotein binding  plasma membrane  integral component of plasma membrane  cell adhesion  integrin-mediated signaling pathway  opsonization  positive regulation of cell proliferation  response to bacterium  positive regulation of cell-cell adhesion  extracellular matrix organization  positive regulation of inflammatory response  positive regulation of phagocytosis  positive regulation of T cell activation  leukocyte migration  thrombospondin receptor activity  extracellular exosome  
Pathways : KEGGECM-receptor interaction   
NDEx NetworkCD47
Atlas of Cancer Signalling NetworkCD47
Wikipedia pathwaysCD47
Orthology - Evolution
OrthoDB961
GeneTree (enSembl)ENSG00000196776
Phylogenetic Trees/Animal Genes : TreeFamCD47
Homologs : HomoloGeneCD47
Homology/Alignments : Family Browser (UCSC)CD47
Gene fusions - Rearrangements
Fusion: TCGACD47 3q13.12 ZFR 5p13.3 PRAD
Polymorphisms : SNP, variants
NCBI Variation ViewerCD47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD47
dbVarCD47
ClinVarCD47
1000_GenomesCD47 
Exome Variant ServerCD47
ExAC (Exome Aggregation Consortium)CD47 (select the gene name)
Genetic variants : HAPMAP961
Genomic Variants (DGV)CD47 [DGVbeta]
Mutations
ICGC Data PortalCD47 
TCGA Data PortalCD47 
Broad Tumor PortalCD47
OASIS PortalCD47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD47 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD47
DgiDB (Drug Gene Interaction Database)CD47
DoCM (Curated mutations)CD47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD47 (select a term)
intoGenCD47
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)3:107761941-107809935  ENSG00000196776
CONAN: Copy Number AnalysisCD47 
Mutations and Diseases : HGMDCD47
OMIM601028   
MedgenCD47
Genetic Testing Registry CD47
NextProtQ08722 [Medical]
TSGene961
GENETestsCD47
Huge Navigator CD47 [HugePedia]
snp3D : Map Gene to Disease961
BioCentury BCIQCD47
ClinGenCD47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD961
Chemical/Pharm GKB GenePA26222
Clinical trialCD47
Miscellaneous
canSAR (ICR)CD47 (select the gene name)
Probes
Litterature
PubMed135 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD47
EVEXCD47
GoPubMedCD47
iHOPCD47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:41:10 CEST 2016

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