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CD47 (CD47 molecule)

Identity

Other namesIAP
MER6
OA3
HGNC (Hugo) CD47
LocusID (NCBI) 961
Location 3q13.12
Location_base_pair Starts at 107761941 and ends at 107809935 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CD47   1682
Cards
Entrez_Gene (NCBI)CD47  961  CD47 molecule
GeneCards (Weizmann)CD47
Ensembl hg19 (Hinxton)ENSG00000196776 [Gene_View]  chr3:107761941-107809935 [Contig_View]  CD47 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196776 [Gene_View]  chr3:107761941-107809935 [Contig_View]  CD47 [Vega]
ICGC DataPortalENSG00000196776
cBioPortalCD47
AceView (NCBI)CD47
Genatlas (Paris)CD47
WikiGenes961
SOURCE (Princeton)CD47
Genomic and cartography
GoldenPath hg19 (UCSC)CD47  -     chr3:107761941-107809935 -  3q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CD47  -     3q13.12   [Description]    (hg38-Dec_2013)
EnsemblCD47 - 3q13.12 [CytoView hg19]  CD47 - 3q13.12 [CytoView hg38]
Mapping of homologs : NCBICD47 [Mapview hg19]  CD47 [Mapview hg38]
OMIM601028   
Gene and transcription
Genbank (Entrez)AI701980 AK096670 AK124152 AK289813 AL832675
RefSeq transcript (Entrez)NM_001025079 NM_001025080 NM_001777 NM_198793
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_005612 NW_001838881 NW_004929311
Consensus coding sequences : CCDS (NCBI)CD47
Cluster EST : UnigeneHs.446414 [ NCBI ]
CGAP (NCI)Hs.446414
Alternative Splicing : Fast-db (Paris)GSHG0021913
Alternative Splicing GalleryENSG00000196776
Gene ExpressionCD47 [ NCBI-GEO ]     CD47 [ SEEK ]   CD47 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08722 (Uniprot)
NextProtQ08722  [Medical]
With graphics : InterProQ08722
Splice isoforms : SwissVarQ08722 (Swissvar)
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)CD47    CD47_TM    CD47_Vset    Ig-like_dom    Ig-like_fold   
Related proteins : CluSTrQ08722
Domain families : Pfam (Sanger)CD47 (PF04549)    V-set_CD47 (PF08204)   
Domain families : Pfam (NCBI)pfam04549    pfam08204   
DMDM Disease mutations961
Blocks (Seattle)Q08722
PDB (SRS)2JJS    2JJT    2VSC    4CMM    4KJY   
PDB (PDBSum)2JJS    2JJT    2VSC    4CMM    4KJY   
PDB (IMB)2JJS    2JJT    2VSC    4CMM    4KJY   
PDB (RSDB)2JJS    2JJT    2VSC    4CMM    4KJY   
Human Protein AtlasENSG00000196776
Peptide AtlasQ08722
HPRD03017
IPIIPI00374740   IPI00216514   IPI00872082   IPI00216516   IPI00795679   IPI00983236   
Protein Interaction databases
DIP (DOE-UCLA)Q08722
IntAct (EBI)Q08722
FunCoupENSG00000196776
BioGRIDCD47
IntegromeDBCD47
STRING (EMBL)CD47
Ontologies - Pathways
QuickGOQ08722
Ontology : AmiGOprotein binding  plasma membrane  integral component of plasma membrane  cell adhesion  integrin-mediated signaling pathway  blood coagulation  opsonization  positive regulation of cell proliferation  response to bacterium  positive regulation of cell-cell adhesion  extracellular matrix organization  positive regulation of inflammatory response  positive regulation of phagocytosis  positive regulation of T cell activation  leukocyte migration  thrombospondin receptor activity  extracellular vesicular exosome  
Ontology : EGO-EBIprotein binding  plasma membrane  integral component of plasma membrane  cell adhesion  integrin-mediated signaling pathway  blood coagulation  opsonization  positive regulation of cell proliferation  response to bacterium  positive regulation of cell-cell adhesion  extracellular matrix organization  positive regulation of inflammatory response  positive regulation of phagocytosis  positive regulation of T cell activation  leukocyte migration  thrombospondin receptor activity  extracellular vesicular exosome  
Pathways : KEGGECM-receptor interaction   
Protein Interaction DatabaseCD47
DoCM (Curated mutations)CD47
Wikipedia pathwaysCD47
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCD47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD47
dbVarCD47
ClinVarCD47
1000_GenomesCD47 
Exome Variant ServerCD47
SNP (GeneSNP Utah)CD47
SNP : HGBaseCD47
Genetic variants : HAPMAPCD47
Genomic VariantsCD47  CD47 [DGVbeta]
Mutations
ICGC Data PortalENSG00000196776 
Somatic Mutations in Cancer : COSMICCD47 
CONAN: Copy Number AnalysisCD47 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)3:107761941-107809935
Mutations and Diseases : HGMDCD47
OMIM601028   
MedgenCD47
NextProtQ08722 [Medical]
GENETestsCD47
Disease Genetic AssociationCD47
Huge Navigator CD47 [HugePedia]  CD47 [HugeCancerGEM]
snp3D : Map Gene to Disease961
DGIdb (Drug Gene Interaction db)CD47
General knowledge
Homologs : HomoloGeneCD47
Homology/Alignments : Family Browser (UCSC)CD47
Phylogenetic Trees/Animal Genes : TreeFamCD47
Chemical/Protein Interactions : CTD961
Chemical/Pharm GKB GenePA26222
Clinical trialCD47
Cancer Resource (Charite)ENSG00000196776
Other databases
Probes
Litterature
PubMed116 Pubmed reference(s) in Entrez
CoreMineCD47
GoPubMedCD47
iHOPCD47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 20:43:49 CET 2014

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