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CD55 (CD55 molecule (Cromer blood group))

Identity

Alias_namesDAF
decay accelerating factor for complement (CD55, Cromer blood group system)
CD55 molecule, decay accelerating factor for complement (Cromer blood group)
Alias_symbol (synonym)CR
TC
CROM
Other alias
HGNC (Hugo) CD55
LocusID (NCBI) 1604
Atlas_Id 40260
Location 1q32.2  [Link to chromosome band 1q32]
Location_base_pair Starts at 207321472 and ends at 207360966 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CD55 (1q32.2) / C4BPA (1q32.2)CD55 (1q32.2) / CD34 (1q32.2)CD55 (1q32.2) / PLD5 (1q43)
IQCJ-SCHIP1 (3q25.32) / CD55 (1q32.2)LIN7C (11p14.1) / CD55 (1q32.2)MRTO4 (1p36.13) / CD55 (1q32.2)
CD55 1q32.2 / C4BPA 1q32.2CD55 1q32.2 / PLD5 1q43

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD55   2665
LRG (Locus Reference Genomic)LRG_127
Cards
Entrez_Gene (NCBI)CD55  1604  CD55 molecule (Cromer blood group)
AliasesCR; CROM; DAF; TC
GeneCards (Weizmann)CD55
Ensembl hg19 (Hinxton)ENSG00000196352 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196352 [Gene_View]  chr1:207321472-207360966 [Contig_View]  CD55 [Vega]
ICGC DataPortalENSG00000196352
TCGA cBioPortalCD55
AceView (NCBI)CD55
Genatlas (Paris)CD55
WikiGenes1604
SOURCE (Princeton)CD55
Genetics Home Reference (NIH)CD55
Genomic and cartography
GoldenPath hg38 (UCSC)CD55  -     chr1:207321472-207360966 +  1q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD55  -     1q32.2   [Description]    (hg19-Feb_2009)
EnsemblCD55 - 1q32.2 [CytoView hg19]  CD55 - 1q32.2 [CytoView hg38]
Mapping of homologs : NCBICD55 [Mapview hg19]  CD55 [Mapview hg38]
OMIM125240   613793   
Gene and transcription
Genbank (Entrez)AB240566 AB240567 AB240568 AB240569 AB240570
RefSeq transcript (Entrez)NM_000574 NM_001114543 NM_001114544 NM_001114752 NM_001300902 NM_001300903 NM_001300904
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD55
Cluster EST : UnigeneHs.609950 [ NCBI ]
CGAP (NCI)Hs.609950
Alternative Splicing GalleryENSG00000196352
Gene ExpressionCD55 [ NCBI-GEO ]   CD55 [ EBI - ARRAY_EXPRESS ]   CD55 [ SEEK ]   CD55 [ MEM ]
Gene Expression Viewer (FireBrowse)CD55 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1604
GTEX Portal (Tissue expression)CD55
Protein : pattern, domain, 3D structure
UniProt/SwissProtP08174   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP08174  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP08174
Splice isoforms : SwissVarP08174
PhosPhoSitePlusP08174
Domaine pattern : Prosite (Expaxy)SUSHI (PS50923)   
Domains : Interpro (EBI)Sushi_SCR_CCP_dom   
Domain families : Pfam (Sanger)Sushi (PF00084)   
Domain families : Pfam (NCBI)pfam00084   
Domain families : Smart (EMBL)CCP (SM00032)  
Conserved Domain (NCBI)CD55
DMDM Disease mutations1604
Blocks (Seattle)CD55
PDB (SRS)1H03    1H04    1H2P    1H2Q    1M11    1NWV    1OJV    1OJW    1OJY    1OK1    1OK2    1OK3    1OK9    1UOT    1UPN    2C8I    2QZD    2QZF    2QZH    3IYP    3J24    5FOA   
PDB (PDBSum)1H03    1H04    1H2P    1H2Q    1M11    1NWV    1OJV    1OJW    1OJY    1OK1    1OK2    1OK3    1OK9    1UOT    1UPN    2C8I    2QZD    2QZF    2QZH    3IYP    3J24    5FOA   
PDB (IMB)1H03    1H04    1H2P    1H2Q    1M11    1NWV    1OJV    1OJW    1OJY    1OK1    1OK2    1OK3    1OK9    1UOT    1UPN    2C8I    2QZD    2QZF    2QZH    3IYP    3J24    5FOA   
PDB (RSDB)1H03    1H04    1H2P    1H2Q    1M11    1NWV    1OJV    1OJW    1OJY    1OK1    1OK2    1OK3    1OK9    1UOT    1UPN    2C8I    2QZD    2QZF    2QZH    3IYP    3J24    5FOA   
Structural Biology KnowledgeBase1H03    1H04    1H2P    1H2Q    1M11    1NWV    1OJV    1OJW    1OJY    1OK1    1OK2    1OK3    1OK9    1UOT    1UPN    2C8I    2QZD    2QZF    2QZH    3IYP    3J24    5FOA   
SCOP (Structural Classification of Proteins)1H03    1H04    1H2P    1H2Q    1M11    1NWV    1OJV    1OJW    1OJY    1OK1    1OK2    1OK3    1OK9    1UOT    1UPN    2C8I    2QZD    2QZF    2QZH    3IYP    3J24    5FOA   
CATH (Classification of proteins structures)1H03    1H04    1H2P    1H2Q    1M11    1NWV    1OJV    1OJW    1OJY    1OK1    1OK2    1OK3    1OK9    1UOT    1UPN    2C8I    2QZD    2QZF    2QZH    3IYP    3J24    5FOA   
SuperfamilyP08174
Human Protein AtlasENSG00000196352
Peptide AtlasP08174
HPRD00500
IPIIPI00292069   IPI00216550   IPI00908978   IPI00382926   IPI00152418   IPI00783145   IPI00784169   IPI00477739   IPI01012703   IPI00985305   
Protein Interaction databases
DIP (DOE-UCLA)P08174
IntAct (EBI)P08174
FunCoupENSG00000196352
BioGRIDCD55
STRING (EMBL)CD55
ZODIACCD55
Ontologies - Pathways
QuickGOP08174
Ontology : AmiGOGolgi membrane  virus receptor activity  protein binding  extracellular region  plasma membrane  plasma membrane  integral component of plasma membrane  ER to Golgi vesicle-mediated transport  complement activation, classical pathway  positive regulation of cytosolic calcium ion concentration  lipid binding  cell surface  transport vesicle  regulation of complement activation  secretory granule membrane  anchored component of membrane  regulation of lipopolysaccharide-mediated signaling pathway  endoplasmic reticulum-Golgi intermediate compartment membrane  CD4-positive, alpha-beta T cell cytokine production  neutrophil degranulation  innate immune response  membrane raft  respiratory burst  negative regulation of complement activation  viral entry into host cell  extracellular exosome  ficolin-1-rich granule membrane  positive regulation of CD4-positive, alpha-beta T cell activation  positive regulation of CD4-positive, alpha-beta T cell proliferation  
Ontology : EGO-EBIGolgi membrane  virus receptor activity  protein binding  extracellular region  plasma membrane  plasma membrane  integral component of plasma membrane  ER to Golgi vesicle-mediated transport  complement activation, classical pathway  positive regulation of cytosolic calcium ion concentration  lipid binding  cell surface  transport vesicle  regulation of complement activation  secretory granule membrane  anchored component of membrane  regulation of lipopolysaccharide-mediated signaling pathway  endoplasmic reticulum-Golgi intermediate compartment membrane  CD4-positive, alpha-beta T cell cytokine production  neutrophil degranulation  innate immune response  membrane raft  respiratory burst  negative regulation of complement activation  viral entry into host cell  extracellular exosome  ficolin-1-rich granule membrane  positive regulation of CD4-positive, alpha-beta T cell activation  positive regulation of CD4-positive, alpha-beta T cell proliferation  
Pathways : KEGGComplement and coagulation cascades    Hematopoietic cell lineage    Viral myocarditis   
NDEx NetworkCD55
Atlas of Cancer Signalling NetworkCD55
Wikipedia pathwaysCD55
Orthology - Evolution
OrthoDB1604
GeneTree (enSembl)ENSG00000196352
Phylogenetic Trees/Animal Genes : TreeFamCD55
HOVERGENP08174
HOGENOMP08174
Homologs : HomoloGeneCD55
Homology/Alignments : Family Browser (UCSC)CD55
Gene fusions - Rearrangements
Fusion : MitelmanCD55/C4BPA [1q32.2/1q32.2]  
Fusion : MitelmanCD55/PLD5 [1q32.2/1q43]  [t(1;1)(q32;q43)]  
Fusion: TCGACD55 1q32.2 C4BPA 1q32.2 LUAD
Fusion: TCGACD55 1q32.2 PLD5 1q43 SKCM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD55 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD55
dbVarCD55
ClinVarCD55
1000_GenomesCD55 
Exome Variant ServerCD55
ExAC (Exome Aggregation Consortium)CD55 (select the gene name)
Genetic variants : HAPMAP1604
Genomic Variants (DGV)CD55 [DGVbeta]
DECIPHERCD55 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD55 
Mutations
ICGC Data PortalCD55 
TCGA Data PortalCD55 
Broad Tumor PortalCD55
OASIS PortalCD55 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD55  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD55
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD55
DgiDB (Drug Gene Interaction Database)CD55
DoCM (Curated mutations)CD55 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD55 (select a term)
intoGenCD55
Cancer3DCD55(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM125240    613793   
Orphanet
MedgenCD55
Genetic Testing Registry CD55
NextProtP08174 [Medical]
TSGene1604
GENETestsCD55
Huge Navigator CD55 [HugePedia]
snp3D : Map Gene to Disease1604
BioCentury BCIQCD55
ClinGenCD55
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1604
Chemical/Pharm GKB GenePA27137
Clinical trialCD55
Miscellaneous
canSAR (ICR)CD55 (select the gene name)
Probes
Litterature
PubMed208 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD55
EVEXCD55
GoPubMedCD55
iHOPCD55
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:09:40 CEST 2017

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