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CD5L (CD5 molecule like)

Identity

Alias_namesAPI6
apoptosis inhibitor 6
CD5 antigen-like (scavenger receptor cysteine rich family)
CD5 molecule-like
Alias_symbol (synonym)Spalpha
Other aliasAIM
CT-2
PRO229
SP-ALPHA
hAIM
HGNC (Hugo) CD5L
LocusID (NCBI) 922
Atlas_Id 50837
Location 1q23.1  [Link to chromosome band 1q23]
Location_base_pair Starts at 157827071 and ends at 157841844 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD5L   1690
Cards
Entrez_Gene (NCBI)CD5L  922  CD5 molecule like
AliasesAIM; API6; CT-2; PRO229; 
SP-ALPHA; Spalpha; hAIM
GeneCards (Weizmann)CD5L
Ensembl hg19 (Hinxton)ENSG00000073754 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000073754 [Gene_View]  chr1:157827071-157841844 [Contig_View]  CD5L [Vega]
ICGC DataPortalENSG00000073754
TCGA cBioPortalCD5L
AceView (NCBI)CD5L
Genatlas (Paris)CD5L
WikiGenes922
SOURCE (Princeton)CD5L
Genetics Home Reference (NIH)CD5L
Genomic and cartography
GoldenPath hg38 (UCSC)CD5L  -     chr1:157827071-157841844 -  1q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD5L  -     1q23.1   [Description]    (hg19-Feb_2009)
EnsemblCD5L - 1q23.1 [CytoView hg19]  CD5L - 1q23.1 [CytoView hg38]
Mapping of homologs : NCBICD5L [Mapview hg19]  CD5L [Mapview hg38]
OMIM602592   
Gene and transcription
Genbank (Entrez)AF011429 AF147312 AK292040 AY358494 BC033586
RefSeq transcript (Entrez)NM_001347698 NM_005894
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD5L
Cluster EST : UnigeneHs.134035 [ NCBI ]
CGAP (NCI)Hs.134035
Alternative Splicing GalleryENSG00000073754
Gene ExpressionCD5L [ NCBI-GEO ]   CD5L [ EBI - ARRAY_EXPRESS ]   CD5L [ SEEK ]   CD5L [ MEM ]
Gene Expression Viewer (FireBrowse)CD5L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)922
GTEX Portal (Tissue expression)CD5L
Human Protein AtlasENSG00000073754-CD5L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43866   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43866  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43866
Splice isoforms : SwissVarO43866
PhosPhoSitePlusO43866
Domaine pattern : Prosite (Expaxy)SRCR_1 (PS00420)    SRCR_2 (PS50287)   
Domains : Interpro (EBI)SRCR    SRCR-like_dom   
Domain families : Pfam (Sanger)SRCR (PF00530)   
Domain families : Pfam (NCBI)pfam00530   
Domain families : Smart (EMBL)SR (SM00202)  
Conserved Domain (NCBI)CD5L
DMDM Disease mutations922
Blocks (Seattle)CD5L
SuperfamilyO43866
Human Protein Atlas [tissue]ENSG00000073754-CD5L [tissue]
Peptide AtlasO43866
HPRD03997
IPIIPI00025204   
Protein Interaction databases
DIP (DOE-UCLA)O43866
IntAct (EBI)O43866
FunCoupENSG00000073754
BioGRIDCD5L
STRING (EMBL)CD5L
ZODIACCD5L
Ontologies - Pathways
QuickGOO43866
Ontology : AmiGOimmune system process  scavenger receptor activity  extracellular region  extracellular space  cytoplasm  receptor-mediated endocytosis  apoptotic process  inflammatory response  cellular defense response  membrane  extracellular exosome  blood microparticle  
Ontology : EGO-EBIimmune system process  scavenger receptor activity  extracellular region  extracellular space  cytoplasm  receptor-mediated endocytosis  apoptotic process  inflammatory response  cellular defense response  membrane  extracellular exosome  blood microparticle  
NDEx NetworkCD5L
Atlas of Cancer Signalling NetworkCD5L
Wikipedia pathwaysCD5L
Orthology - Evolution
OrthoDB922
GeneTree (enSembl)ENSG00000073754
Phylogenetic Trees/Animal Genes : TreeFamCD5L
HOVERGENO43866
HOGENOMO43866
Homologs : HomoloGeneCD5L
Homology/Alignments : Family Browser (UCSC)CD5L
Gene fusions - Rearrangements
Tumor Fusion PortalCD5L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD5L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD5L
dbVarCD5L
ClinVarCD5L
1000_GenomesCD5L 
Exome Variant ServerCD5L
ExAC (Exome Aggregation Consortium)ENSG00000073754
GNOMAD BrowserENSG00000073754
Genetic variants : HAPMAP922
Genomic Variants (DGV)CD5L [DGVbeta]
DECIPHERCD5L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD5L 
Mutations
ICGC Data PortalCD5L 
TCGA Data PortalCD5L 
Broad Tumor PortalCD5L
OASIS PortalCD5L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD5L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD5L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD5L
DgiDB (Drug Gene Interaction Database)CD5L
DoCM (Curated mutations)CD5L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD5L (select a term)
intoGenCD5L
Cancer3DCD5L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602592   
Orphanet
DisGeNETCD5L
MedgenCD5L
Genetic Testing Registry CD5L
NextProtO43866 [Medical]
TSGene922
GENETestsCD5L
Target ValidationCD5L
Huge Navigator CD5L [HugePedia]
snp3D : Map Gene to Disease922
BioCentury BCIQCD5L
ClinGenCD5L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD922
Chemical/Pharm GKB GenePA26229
Clinical trialCD5L
Miscellaneous
canSAR (ICR)CD5L (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD5L
EVEXCD5L
GoPubMedCD5L
iHOPCD5L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:06:48 CET 2017

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