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CD6 (CD6 molecule)

Identity

Alias_namesCD6 antigen
Alias_symbol (synonym)Tp120
Other aliasTP120
HGNC (Hugo) CD6
LocusID (NCBI) 923
Atlas_Id 45784
Location 11q12.2  [Link to chromosome band 11q12]
Location_base_pair Starts at 60971641 and ends at 61020376 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD6   1691
Cards
Entrez_Gene (NCBI)CD6  923  CD6 molecule
AliasesTP120
GeneCards (Weizmann)CD6
Ensembl hg19 (Hinxton)ENSG00000013725 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000013725 [Gene_View]  chr11:60971641-61020376 [Contig_View]  CD6 [Vega]
ICGC DataPortalENSG00000013725
TCGA cBioPortalCD6
AceView (NCBI)CD6
Genatlas (Paris)CD6
WikiGenes923
SOURCE (Princeton)CD6
Genetics Home Reference (NIH)CD6
Genomic and cartography
GoldenPath hg38 (UCSC)CD6  -     chr11:60971641-61020376 +  11q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD6  -     11q12.2   [Description]    (hg19-Feb_2009)
EnsemblCD6 - 11q12.2 [CytoView hg19]  CD6 - 11q12.2 [CytoView hg38]
Mapping of homologs : NCBICD6 [Mapview hg19]  CD6 [Mapview hg38]
OMIM186720   
Gene and transcription
Genbank (Entrez)AI657093 AK126159 AK128419 AK292704 AK312749
RefSeq transcript (Entrez)NM_001254750 NM_001254751 NM_006725
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD6
Cluster EST : UnigeneHs.744366 [ NCBI ]
CGAP (NCI)Hs.744366
Alternative Splicing GalleryENSG00000013725
Gene ExpressionCD6 [ NCBI-GEO ]   CD6 [ EBI - ARRAY_EXPRESS ]   CD6 [ SEEK ]   CD6 [ MEM ]
Gene Expression Viewer (FireBrowse)CD6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)923
GTEX Portal (Tissue expression)CD6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP30203   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP30203  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP30203
Splice isoforms : SwissVarP30203
PhosPhoSitePlusP30203
Domaine pattern : Prosite (Expaxy)SRCR_1 (PS00420)    SRCR_2 (PS50287)   
Domains : Interpro (EBI)SRCR    SRCR-like_dom   
Domain families : Pfam (Sanger)SRCR (PF00530)   
Domain families : Pfam (NCBI)pfam00530   
Domain families : Smart (EMBL)SR (SM00202)  
Conserved Domain (NCBI)CD6
DMDM Disease mutations923
Blocks (Seattle)CD6
PDB (SRS)5A2E   
PDB (PDBSum)5A2E   
PDB (IMB)5A2E   
PDB (RSDB)5A2E   
Structural Biology KnowledgeBase5A2E   
SCOP (Structural Classification of Proteins)5A2E   
CATH (Classification of proteins structures)5A2E   
SuperfamilyP30203
Human Protein AtlasENSG00000013725
Peptide AtlasP30203
HPRD01724
IPIIPI00025700   IPI00374647   IPI00218871   IPI00218872   IPI00218873   IPI01014841   IPI01015727   IPI00845413   IPI00845490   IPI01012838   
Protein Interaction databases
DIP (DOE-UCLA)P30203
IntAct (EBI)P30203
FunCoupENSG00000013725
BioGRIDCD6
STRING (EMBL)CD6
ZODIACCD6
Ontologies - Pathways
QuickGOP30203
Ontology : AmiGOlipopolysaccharide binding  immunological synapse formation  immunological synapse  adaptive immune response  acute inflammatory response to antigenic stimulus  scavenger receptor activity  protein binding  extracellular region  integral component of plasma membrane  receptor-mediated endocytosis  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  intrinsic component of plasma membrane  lipopolysaccharide-mediated signaling pathway  response to lipopolysaccharide  T cell receptor complex  positive regulation of T cell proliferation  innate immune response  lipoteichoic acid binding  positive regulation of cytokine production involved in inflammatory response  
Ontology : EGO-EBIlipopolysaccharide binding  immunological synapse formation  immunological synapse  adaptive immune response  acute inflammatory response to antigenic stimulus  scavenger receptor activity  protein binding  extracellular region  integral component of plasma membrane  receptor-mediated endocytosis  heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules  intrinsic component of plasma membrane  lipopolysaccharide-mediated signaling pathway  response to lipopolysaccharide  T cell receptor complex  positive regulation of T cell proliferation  innate immune response  lipoteichoic acid binding  positive regulation of cytokine production involved in inflammatory response  
Pathways : KEGGCell adhesion molecules (CAMs)   
NDEx NetworkCD6
Atlas of Cancer Signalling NetworkCD6
Wikipedia pathwaysCD6
Orthology - Evolution
OrthoDB923
GeneTree (enSembl)ENSG00000013725
Phylogenetic Trees/Animal Genes : TreeFamCD6
HOVERGENP30203
HOGENOMP30203
Homologs : HomoloGeneCD6
Homology/Alignments : Family Browser (UCSC)CD6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD6
dbVarCD6
ClinVarCD6
1000_GenomesCD6 
Exome Variant ServerCD6
ExAC (Exome Aggregation Consortium)CD6 (select the gene name)
Genetic variants : HAPMAP923
Genomic Variants (DGV)CD6 [DGVbeta]
DECIPHERCD6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD6 
Mutations
ICGC Data PortalCD6 
TCGA Data PortalCD6 
Broad Tumor PortalCD6
OASIS PortalCD6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD6
DgiDB (Drug Gene Interaction Database)CD6
DoCM (Curated mutations)CD6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD6 (select a term)
intoGenCD6
Cancer3DCD6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM186720   
Orphanet
MedgenCD6
Genetic Testing Registry CD6
NextProtP30203 [Medical]
TSGene923
GENETestsCD6
Target ValidationCD6
Huge Navigator CD6 [HugePedia]
snp3D : Map Gene to Disease923
BioCentury BCIQCD6
ClinGenCD6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD923
Chemical/Pharm GKB GenePA26230
Clinical trialCD6
Miscellaneous
canSAR (ICR)CD6 (select the gene name)
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD6
EVEXCD6
GoPubMedCD6
iHOPCD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:27:29 CEST 2017

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