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CD69 (CD69 molecule)

Identity

Alias_namesCD69 antigen (p60
Alias_symbol (synonym)CLEC2C
Other aliasAIM
BL-AC/P26
EA1
GP32/28
MLR-3
HGNC (Hugo) CD69
LocusID (NCBI) 969
Atlas_Id 988
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 9752486 and ends at 9760901 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NAMPT (7q22.3) / CD69 (12p13.31)SLC39A11 (17q24.3) / CD69 (12p13.31)SLC39A11 17q24.3 / CD69 12p13.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD69   1694
Cards
Entrez_Gene (NCBI)CD69  969  CD69 molecule
AliasesAIM; BL-AC/P26; CLEC2C; EA1; 
GP32/28; MLR-3
GeneCards (Weizmann)CD69
Ensembl hg19 (Hinxton)ENSG00000110848 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110848 [Gene_View]  chr12:9752486-9760901 [Contig_View]  CD69 [Vega]
ICGC DataPortalENSG00000110848
TCGA cBioPortalCD69
AceView (NCBI)CD69
Genatlas (Paris)CD69
WikiGenes969
SOURCE (Princeton)CD69
Genetics Home Reference (NIH)CD69
Genomic and cartography
GoldenPath hg38 (UCSC)CD69  -     chr12:9752486-9760901 -  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD69  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblCD69 - 12p13.31 [CytoView hg19]  CD69 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBICD69 [Mapview hg19]  CD69 [Mapview hg38]
OMIM107273   
Gene and transcription
Genbank (Entrez)AK291869 AK303174 AK303383 AY238518 BC007037
RefSeq transcript (Entrez)NM_001781
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD69
Cluster EST : UnigeneHs.208854 [ NCBI ]
CGAP (NCI)Hs.208854
Alternative Splicing GalleryENSG00000110848
Gene ExpressionCD69 [ NCBI-GEO ]   CD69 [ EBI - ARRAY_EXPRESS ]   CD69 [ SEEK ]   CD69 [ MEM ]
Gene Expression Viewer (FireBrowse)CD69 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)969
GTEX Portal (Tissue expression)CD69
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ07108   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ07108  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ07108
Splice isoforms : SwissVarQ07108
PhosPhoSitePlusQ07108
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    CTDL_fold    NKR-like_CTLD   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CD69
DMDM Disease mutations969
Blocks (Seattle)CD69
PDB (SRS)1E87    1E8I    1FM5    3CCK    3HUP   
PDB (PDBSum)1E87    1E8I    1FM5    3CCK    3HUP   
PDB (IMB)1E87    1E8I    1FM5    3CCK    3HUP   
PDB (RSDB)1E87    1E8I    1FM5    3CCK    3HUP   
Structural Biology KnowledgeBase1E87    1E8I    1FM5    3CCK    3HUP   
SCOP (Structural Classification of Proteins)1E87    1E8I    1FM5    3CCK    3HUP   
CATH (Classification of proteins structures)1E87    1E8I    1FM5    3CCK    3HUP   
SuperfamilyQ07108
Human Protein AtlasENSG00000110848
Peptide AtlasQ07108
HPRD00119
IPIIPI00014854   IPI00798134   
Protein Interaction databases
DIP (DOE-UCLA)Q07108
IntAct (EBI)Q07108
FunCoupENSG00000110848
BioGRIDCD69
STRING (EMBL)CD69
ZODIACCD69
Ontologies - Pathways
QuickGOQ07108
Ontology : AmiGOtransmembrane signaling receptor activity  calcium ion binding  protein binding  integral component of plasma membrane  signal transduction  external side of plasma membrane  carbohydrate binding  cellular response to drug  protein homodimerization activity  protein complex  
Ontology : EGO-EBItransmembrane signaling receptor activity  calcium ion binding  protein binding  integral component of plasma membrane  signal transduction  external side of plasma membrane  carbohydrate binding  cellular response to drug  protein homodimerization activity  protein complex  
NDEx NetworkCD69
Atlas of Cancer Signalling NetworkCD69
Wikipedia pathwaysCD69
Orthology - Evolution
OrthoDB969
GeneTree (enSembl)ENSG00000110848
Phylogenetic Trees/Animal Genes : TreeFamCD69
HOVERGENQ07108
HOGENOMQ07108
Homologs : HomoloGeneCD69
Homology/Alignments : Family Browser (UCSC)CD69
Gene fusions - Rearrangements
Fusion : MitelmanSLC39A11/CD69 [17q24.3/12p13.31]  [t(12;17)(p13;q25)]  
Fusion: TCGASLC39A11 17q24.3 CD69 12p13.31 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD69 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD69
dbVarCD69
ClinVarCD69
1000_GenomesCD69 
Exome Variant ServerCD69
ExAC (Exome Aggregation Consortium)CD69 (select the gene name)
Genetic variants : HAPMAP969
Genomic Variants (DGV)CD69 [DGVbeta]
DECIPHERCD69 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD69 
Mutations
ICGC Data PortalCD69 
TCGA Data PortalCD69 
Broad Tumor PortalCD69
OASIS PortalCD69 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD69  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD69
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD69
DgiDB (Drug Gene Interaction Database)CD69
DoCM (Curated mutations)CD69 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD69 (select a term)
intoGenCD69
Cancer3DCD69(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM107273   
Orphanet
MedgenCD69
Genetic Testing Registry CD69
NextProtQ07108 [Medical]
TSGene969
GENETestsCD69
Target ValidationCD69
Huge Navigator CD69 [HugePedia]
snp3D : Map Gene to Disease969
BioCentury BCIQCD69
ClinGenCD69
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD969
Chemical/Pharm GKB GenePA26233
Clinical trialCD69
Miscellaneous
canSAR (ICR)CD69 (select the gene name)
Probes
Litterature
PubMed75 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD69
EVEXCD69
GoPubMedCD69
iHOPCD69
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:57:18 CEST 2017

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