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CD7 (CD7 molecule)

Identity

Alias_namesCD7 antigen (p41)
Alias_symbol (synonym)GP40
LEU-9
TP41
Tp40
Other alias
HGNC (Hugo) CD7
LocusID (NCBI) 924
Atlas_Id 989
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 80272746 and ends at 80275480 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD7   1695
Cards
Entrez_Gene (NCBI)CD7  924  CD7 molecule
AliasesGP40; LEU-9; TP41; Tp40
GeneCards (Weizmann)CD7
Ensembl hg19 (Hinxton)ENSG00000173762 [Gene_View]  chr17:80272746-80275480 [Contig_View]  CD7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000173762 [Gene_View]  chr17:80272746-80275480 [Contig_View]  CD7 [Vega]
ICGC DataPortalENSG00000173762
TCGA cBioPortalCD7
AceView (NCBI)CD7
Genatlas (Paris)CD7
WikiGenes924
SOURCE (Princeton)CD7
Genetics Home Reference (NIH)CD7
Genomic and cartography
GoldenPath hg19 (UCSC)CD7  -     chr17:80272746-80275480 -  17q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CD7  -     17q25.3   [Description]    (hg38-Dec_2013)
EnsemblCD7 - 17q25.3 [CytoView hg19]  CD7 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBICD7 [Mapview hg19]  CD7 [Mapview hg38]
OMIM186820   
Gene and transcription
Genbank (Entrez)AK223465 AK298096 AK310061 AK310558 AY935534
RefSeq transcript (Entrez)NM_006137
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010663 NW_004929408
Consensus coding sequences : CCDS (NCBI)CD7
Cluster EST : UnigeneHs.36972 [ NCBI ]
CGAP (NCI)Hs.36972
Alternative Splicing GalleryENSG00000173762
Gene ExpressionCD7 [ NCBI-GEO ]   CD7 [ EBI - ARRAY_EXPRESS ]   CD7 [ SEEK ]   CD7 [ MEM ]
Gene Expression Viewer (FireBrowse)CD7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)924
GTEX Portal (Tissue expression)CD7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP09564   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP09564  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP09564
Splice isoforms : SwissVarP09564
PhosPhoSitePlusP09564
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)CD7
DMDM Disease mutations924
Blocks (Seattle)CD7
SuperfamilyP09564
Human Protein AtlasENSG00000173762
Peptide AtlasP09564
HPRD01732
IPIIPI00015199   
Protein Interaction databases
DIP (DOE-UCLA)P09564
IntAct (EBI)P09564
FunCoupENSG00000173762
BioGRIDCD7
STRING (EMBL)CD7
ZODIACCD7
Ontologies - Pathways
QuickGOP09564
Ontology : AmiGOadaptive immune response  receptor activity  plasma membrane  immune response  transmembrane receptor protein tyrosine kinase signaling pathway  membrane  integral component of membrane  T cell activation  homeostasis of number of cells within a tissue  extracellular exosome  
Ontology : EGO-EBIadaptive immune response  receptor activity  plasma membrane  immune response  transmembrane receptor protein tyrosine kinase signaling pathway  membrane  integral component of membrane  T cell activation  homeostasis of number of cells within a tissue  extracellular exosome  
Pathways : BIOCARTADendritic cells in regulating TH1 and TH2 Development [Genes]   
Pathways : KEGGHematopoietic cell lineage   
NDEx NetworkCD7
Atlas of Cancer Signalling NetworkCD7
Wikipedia pathwaysCD7
Orthology - Evolution
OrthoDB924
GeneTree (enSembl)ENSG00000173762
Phylogenetic Trees/Animal Genes : TreeFamCD7
HOVERGENP09564
HOGENOMP09564
Homologs : HomoloGeneCD7
Homology/Alignments : Family Browser (UCSC)CD7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD7
dbVarCD7
ClinVarCD7
1000_GenomesCD7 
Exome Variant ServerCD7
ExAC (Exome Aggregation Consortium)CD7 (select the gene name)
Genetic variants : HAPMAP924
Genomic Variants (DGV)CD7 [DGVbeta]
DECIPHER (Syndromes)17:80272746-80275480  ENSG00000173762
CONAN: Copy Number AnalysisCD7 
Mutations
ICGC Data PortalCD7 
TCGA Data PortalCD7 
Broad Tumor PortalCD7
OASIS PortalCD7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD7
DgiDB (Drug Gene Interaction Database)CD7
DoCM (Curated mutations)CD7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD7 (select a term)
intoGenCD7
Cancer3DCD7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM186820   
Orphanet
MedgenCD7
Genetic Testing Registry CD7
NextProtP09564 [Medical]
TSGene924
GENETestsCD7
Huge Navigator CD7 [HugePedia]
snp3D : Map Gene to Disease924
BioCentury BCIQCD7
ClinGenCD7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD924
Chemical/Pharm GKB GenePA26234
Clinical trialCD7
Miscellaneous
canSAR (ICR)CD7 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD7
EVEXCD7
GoPubMedCD7
iHOPCD7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:59:29 CET 2017

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