Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CD72 (CD72 molecule)

Identity

Alias_namesCD72 antigen
Alias_symbol (synonym)LYB2
CD72b
Other alias
HGNC (Hugo) CD72
LocusID (NCBI) 971
Atlas_Id 990
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 35609976 and ends at 35618424 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD72   1696
Cards
Entrez_Gene (NCBI)CD72  971  CD72 molecule
AliasesCD72b; LYB2
GeneCards (Weizmann)CD72
Ensembl hg19 (Hinxton)ENSG00000137101 [Gene_View]  chr9:35609976-35618424 [Contig_View]  CD72 [Vega]
Ensembl hg38 (Hinxton)ENSG00000137101 [Gene_View]  chr9:35609976-35618424 [Contig_View]  CD72 [Vega]
ICGC DataPortalENSG00000137101
TCGA cBioPortalCD72
AceView (NCBI)CD72
Genatlas (Paris)CD72
WikiGenes971
SOURCE (Princeton)CD72
Genetics Home Reference (NIH)CD72
Genomic and cartography
GoldenPath hg19 (UCSC)CD72  -     chr9:35609976-35618424 -  9p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CD72  -     9p13.3   [Description]    (hg38-Dec_2013)
EnsemblCD72 - 9p13.3 [CytoView hg19]  CD72 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBICD72 [Mapview hg19]  CD72 [Mapview hg38]
OMIM107272   
Gene and transcription
Genbank (Entrez)AB209587 AF283777 AK307305 AK309268 AK310093
RefSeq transcript (Entrez)NM_001782
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)CD72
Cluster EST : UnigeneHs.116481 [ NCBI ]
CGAP (NCI)Hs.116481
Alternative Splicing GalleryENSG00000137101
Gene ExpressionCD72 [ NCBI-GEO ]   CD72 [ EBI - ARRAY_EXPRESS ]   CD72 [ SEEK ]   CD72 [ MEM ]
Gene Expression Viewer (FireBrowse)CD72 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)971
GTEX Portal (Tissue expression)CD72
Protein : pattern, domain, 3D structure
UniProt/SwissProtP21854   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP21854  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP21854
Splice isoforms : SwissVarP21854
PhosPhoSitePlusP21854
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin    C-type_lectin-like    C-type_lectin_fold   
Domain families : Pfam (Sanger)Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)CD72
DMDM Disease mutations971
Blocks (Seattle)CD72
SuperfamilyP21854
Human Protein AtlasENSG00000137101
Peptide AtlasP21854
HPRD00118
IPIIPI00010851   IPI00788224   IPI00815820   IPI00513784   IPI00647750   
Protein Interaction databases
DIP (DOE-UCLA)P21854
IntAct (EBI)P21854
FunCoupENSG00000137101
BioGRIDCD72
STRING (EMBL)CD72
ZODIACCD72
Ontologies - Pathways
QuickGOP21854
Ontology : AmiGOtransmembrane signaling receptor activity  receptor binding  protein binding  plasma membrane  integral component of plasma membrane  cell adhesion  signal transduction  carbohydrate binding  
Ontology : EGO-EBItransmembrane signaling receptor activity  receptor binding  protein binding  plasma membrane  integral component of plasma membrane  cell adhesion  signal transduction  carbohydrate binding  
Pathways : KEGGB cell receptor signaling pathway   
NDEx NetworkCD72
Atlas of Cancer Signalling NetworkCD72
Wikipedia pathwaysCD72
Orthology - Evolution
OrthoDB971
GeneTree (enSembl)ENSG00000137101
Phylogenetic Trees/Animal Genes : TreeFamCD72
HOVERGENP21854
HOGENOMP21854
Homologs : HomoloGeneCD72
Homology/Alignments : Family Browser (UCSC)CD72
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD72 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD72
dbVarCD72
ClinVarCD72
1000_GenomesCD72 
Exome Variant ServerCD72
ExAC (Exome Aggregation Consortium)CD72 (select the gene name)
Genetic variants : HAPMAP971
Genomic Variants (DGV)CD72 [DGVbeta]
DECIPHER (Syndromes)9:35609976-35618424  ENSG00000137101
CONAN: Copy Number AnalysisCD72 
Mutations
ICGC Data PortalCD72 
TCGA Data PortalCD72 
Broad Tumor PortalCD72
OASIS PortalCD72 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD72  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD72
BioMutasearch CD72
DgiDB (Drug Gene Interaction Database)CD72
DoCM (Curated mutations)CD72 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD72 (select a term)
intoGenCD72
Cancer3DCD72(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM107272   
Orphanet
MedgenCD72
Genetic Testing Registry CD72
NextProtP21854 [Medical]
TSGene971
GENETestsCD72
Huge Navigator CD72 [HugePedia]
snp3D : Map Gene to Disease971
BioCentury BCIQCD72
ClinGenCD72
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD971
Chemical/Pharm GKB GenePA26235
Clinical trialCD72
Miscellaneous
canSAR (ICR)CD72 (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD72
EVEXCD72
GoPubMedCD72
iHOPCD72
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:59:30 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.