Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CD79B (CD79b molecule)

Identity

Alias_namesIGB
CD79B antigen (immunoglobulin-associated beta)
CD79b molecule, immunoglobulin-associated beta
Alias_symbol (synonym)B29
Other aliasAGM6
HGNC (Hugo) CD79B
LocusID (NCBI) 974
Atlas_Id 43903
Location 17q23.3  [Link to chromosome band 17q23]
Location_base_pair Starts at 63928736 and ends at 63932354 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MAP2K4 (17p12) / CD79B (17q23.3)MAP2K4 17p12 / CD79B 17q23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD79B   1699
LRG (Locus Reference Genomic)LRG_43
Cards
Entrez_Gene (NCBI)CD79B  974  CD79b molecule
AliasesAGM6; B29; IGB
GeneCards (Weizmann)CD79B
Ensembl hg19 (Hinxton)ENSG00000007312 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000007312 [Gene_View]  chr17:63928736-63932354 [Contig_View]  CD79B [Vega]
ICGC DataPortalENSG00000007312
TCGA cBioPortalCD79B
AceView (NCBI)CD79B
Genatlas (Paris)CD79B
WikiGenes974
SOURCE (Princeton)CD79B
Genetics Home Reference (NIH)CD79B
Genomic and cartography
GoldenPath hg38 (UCSC)CD79B  -     chr17:63928736-63932354 -  17q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD79B  -     17q23.3   [Description]    (hg19-Feb_2009)
EnsemblCD79B - 17q23.3 [CytoView hg19]  CD79B - 17q23.3 [CytoView hg38]
Mapping of homologs : NCBICD79B [Mapview hg19]  CD79B [Mapview hg38]
OMIM147245   612692   
Gene and transcription
Genbank (Entrez)AA804163 AK222954 AK223210 AK313583 AX775815
RefSeq transcript (Entrez)NM_000626 NM_001039933 NM_001329050 NM_021602
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD79B
Cluster EST : UnigeneHs.89575 [ NCBI ]
CGAP (NCI)Hs.89575
Alternative Splicing GalleryENSG00000007312
Gene ExpressionCD79B [ NCBI-GEO ]   CD79B [ EBI - ARRAY_EXPRESS ]   CD79B [ SEEK ]   CD79B [ MEM ]
Gene Expression Viewer (FireBrowse)CD79B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)974
GTEX Portal (Tissue expression)CD79B
Human Protein AtlasENSG00000007312-CD79B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40259   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP40259  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40259
Splice isoforms : SwissVarP40259
PhosPhoSitePlusP40259
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    ITAM_1 (PS51055)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set    Phos_immunorcpt_sig_ITAM   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  ITAM (SM00077)  
Conserved Domain (NCBI)CD79B
DMDM Disease mutations974
Blocks (Seattle)CD79B
PDB (SRS)3KG5   
PDB (PDBSum)3KG5   
PDB (IMB)3KG5   
PDB (RSDB)3KG5   
Structural Biology KnowledgeBase3KG5   
SCOP (Structural Classification of Proteins)3KG5   
CATH (Classification of proteins structures)3KG5   
SuperfamilyP40259
Human Protein Atlas [tissue]ENSG00000007312-CD79B [tissue]
Peptide AtlasP40259
HPRD00922
IPIIPI00027668   IPI00218810   IPI00448832   IPI00739725   
Protein Interaction databases
DIP (DOE-UCLA)P40259
IntAct (EBI)P40259
FunCoupENSG00000007312
BioGRIDCD79B
STRING (EMBL)CD79B
ZODIACCD79B
Ontologies - Pathways
QuickGOP40259
Ontology : AmiGOadaptive immune response  transmembrane signaling receptor activity  protein binding  nucleoplasm  cytoplasm  Golgi apparatus  cytosol  plasma membrane  plasma membrane  integral component of plasma membrane  immune response  signal transduction  external side of plasma membrane  B cell receptor complex  B cell differentiation  protein homodimerization activity  B cell receptor signaling pathway  protein homooligomerization  extracellular exosome  
Ontology : EGO-EBIadaptive immune response  transmembrane signaling receptor activity  protein binding  nucleoplasm  cytoplasm  Golgi apparatus  cytosol  plasma membrane  plasma membrane  integral component of plasma membrane  immune response  signal transduction  external side of plasma membrane  B cell receptor complex  B cell differentiation  protein homodimerization activity  B cell receptor signaling pathway  protein homooligomerization  extracellular exosome  
Pathways : BIOCARTAB Cell Receptor Complex [Genes]    CTCF: First Multivalent Nuclear Factor [Genes]    BCR Signaling Pathway [Genes]   
Pathways : KEGGB cell receptor signaling pathway   
NDEx NetworkCD79B
Atlas of Cancer Signalling NetworkCD79B
Wikipedia pathwaysCD79B
Orthology - Evolution
OrthoDB974
GeneTree (enSembl)ENSG00000007312
Phylogenetic Trees/Animal Genes : TreeFamCD79B
HOVERGENP40259
HOGENOMP40259
Homologs : HomoloGeneCD79B
Homology/Alignments : Family Browser (UCSC)CD79B
Gene fusions - Rearrangements
Fusion : MitelmanMAP2K4/CD79B [17p12/17q23.3]  [t(17;17)(p12;q23)]  
Fusion: TCGA_MDACCMAP2K4 17p12 CD79B 17q23.3 BRCA
Tumor Fusion PortalCD79B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD79B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD79B
dbVarCD79B
ClinVarCD79B
1000_GenomesCD79B 
Exome Variant ServerCD79B
ExAC (Exome Aggregation Consortium)ENSG00000007312
GNOMAD BrowserENSG00000007312
Genetic variants : HAPMAP974
Genomic Variants (DGV)CD79B [DGVbeta]
DECIPHERCD79B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD79B 
Mutations
ICGC Data PortalCD79B 
TCGA Data PortalCD79B 
Broad Tumor PortalCD79B
OASIS PortalCD79B [ Somatic mutations - Copy number]
Cancer Gene: CensusCD79B 
Somatic Mutations in Cancer : COSMICCD79B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD79B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
BioMutasearch CD79B
DgiDB (Drug Gene Interaction Database)CD79B
DoCM (Curated mutations)CD79B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD79B (select a term)
intoGenCD79B
Cancer3DCD79B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM147245    612692   
Orphanet10310   
DisGeNETCD79B
MedgenCD79B
Genetic Testing Registry CD79B
NextProtP40259 [Medical]
TSGene974
GENETestsCD79B
Target ValidationCD79B
Huge Navigator CD79B [HugePedia]
snp3D : Map Gene to Disease974
BioCentury BCIQCD79B
ClinGenCD79B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD974
Chemical/Pharm GKB GenePA26238
Clinical trialCD79B
Miscellaneous
canSAR (ICR)CD79B (select the gene name)
Probes
Litterature
PubMed71 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD79B
EVEXCD79B
GoPubMedCD79B
iHOPCD79B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:06:49 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.