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CD83 (CD83 molecule)

Identity

Other namesBL11
HB15
HGNC (Hugo) CD83
LocusID (NCBI) 9308
Location 6p23
Location_base_pair Starts at 14117865 and ends at 14137148 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CD83   1703
Cards
Entrez_Gene (NCBI)CD83  9308  CD83 molecule
GeneCards (Weizmann)CD83
Ensembl (Hinxton)ENSG00000112149 [Gene_View]  chr6:14117865-14137148 [Contig_View]  CD83 [Vega]
AceView (NCBI)CD83
Genatlas (Paris)CD83
WikiGenes9308
SOURCE (Princeton)NM_001040280 NM_001251901 NM_004233
Genomic and cartography
GoldenPath (UCSC)CD83  -  6p23   chr6:14117865-14137148 +  6p23   [Description]    (hg19-Feb_2009)
EnsemblCD83 - 6p23 [CytoView]
Mapping of homologs : NCBICD83 [Mapview]
OMIM604534   
Gene and transcription
Genbank (Entrez)AK223315 AK290426 AK307059 AK309541 BC004351
RefSeq transcript (Entrez)NM_001040280 NM_001251901 NM_004233
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NG_030372 NT_007592 NW_001838973 NW_004929326
Consensus coding sequences : CCDS (NCBI)CD83
Cluster EST : UnigeneHs.595133 [ NCBI ]
CGAP (NCI)Hs.595133
Alternative Splicing : Fast-db (Paris)GSHG0025435
Alternative Splicing GalleryENSG00000112149
Gene ExpressionCD83 [ NCBI-GEO ]     CD83 [ SEEK ]   CD83 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ01151 (Uniprot)
NextProtQ01151  [Medical]
With graphics : InterProQ01151
Splice isoforms : SwissVarQ01151 (Swissvar)
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Related proteins : CluSTrQ01151
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
DMDM Disease mutations9308
Blocks (Seattle)Q01151
Human Protein AtlasENSG00000112149
Peptide AtlasQ01151
HPRD05170
IPIIPI00006003   IPI00845356   
Protein Interaction databases
DIP (DOE-UCLA)Q01151
IntAct (EBI)Q01151
FunCoupENSG00000112149
BioGRIDCD83
InParanoidQ01151
Interologous Interaction database Q01151
IntegromeDBCD83
STRING (EMBL)CD83
Ontologies - Pathways
Ontology : AmiGOplasma membrane  integral to plasma membrane  defense response  humoral immune response  signal transduction  external side of plasma membrane  response to organic cyclic compound  negative regulation of interleukin-4 production  positive regulation of interleukin-10 production  positive regulation of interleukin-2 production  positive regulation of CD4-positive, alpha-beta T cell differentiation  
Ontology : EGO-EBIplasma membrane  integral to plasma membrane  defense response  humoral immune response  signal transduction  external side of plasma membrane  response to organic cyclic compound  negative regulation of interleukin-4 production  positive regulation of interleukin-10 production  positive regulation of interleukin-2 production  positive regulation of CD4-positive, alpha-beta T cell differentiation  
REACTOMECD83
Protein Interaction DatabaseCD83
Wikipedia pathwaysCD83
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CD83
SNP (GeneSNP Utah)CD83
SNP : HGBaseCD83
Genetic variants : HAPMAPCD83
1000_GenomesCD83 
ICGC programENSG00000112149 
Somatic Mutations in Cancer : COSMICCD83 
CONAN: Copy Number AnalysisCD83 
Mutations and Diseases : HGMDCD83
OMIM604534   
GENETestsCD83
Disease Genetic AssociationCD83
Huge Navigator CD83 [HugePedia]  CD83 [HugeCancerGEM]
Genomic VariantsCD83  CD83 [DGVbeta]
Exome VariantCD83
dbVarCD83
ClinVarCD83
snp3D : Map Gene to Disease9308
General knowledge
Homologs : HomoloGeneCD83
Homology/Alignments : Family Browser (UCSC)CD83
Phylogenetic Trees/Animal Genes : TreeFamCD83
Chemical/Protein Interactions : CTD9308
Chemical/Pharm GKB GenePA26241
Clinical trialCD83
Cancer Resource (Charite)ENSG00000112149
Other databases
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
CoreMineCD83
iHOPCD83
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 16:55:28 CEST 2014

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