Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CD83 (CD83 molecule)

Identity

Other namesBL11
HB15
HGNC (Hugo) CD83
LocusID (NCBI) 9308
Atlas_Id 46441
Location 6p23
Location_base_pair Starts at 14117865 and ends at 14137148 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
CD83 6p23 / LAMA2 6q22.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD83   1703
Cards
Entrez_Gene (NCBI)CD83  9308  CD83 molecule
GeneCards (Weizmann)CD83
Ensembl hg19 (Hinxton)ENSG00000112149 [Gene_View]  chr6:14117865-14137148 [Contig_View]  CD83 [Vega]
Ensembl hg38 (Hinxton)ENSG00000112149 [Gene_View]  chr6:14117865-14137148 [Contig_View]  CD83 [Vega]
ICGC DataPortalENSG00000112149
TCGA cBioPortalCD83
AceView (NCBI)CD83
Genatlas (Paris)CD83
WikiGenes9308
SOURCE (Princeton)CD83
Genomic and cartography
GoldenPath hg19 (UCSC)CD83  -     chr6:14117865-14137148 +  6p23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CD83  -     6p23   [Description]    (hg38-Dec_2013)
EnsemblCD83 - 6p23 [CytoView hg19]  CD83 - 6p23 [CytoView hg38]
Mapping of homologs : NCBICD83 [Mapview hg19]  CD83 [Mapview hg38]
OMIM604534   
Gene and transcription
Genbank (Entrez)AK223315 AK290426 AK307059 AK309541 BC004351
RefSeq transcript (Entrez)NM_001040280 NM_001251901 NM_004233
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_030372 NT_007592 NW_004929326
Consensus coding sequences : CCDS (NCBI)CD83
Cluster EST : UnigeneHs.595133 [ NCBI ]
CGAP (NCI)Hs.595133
Alternative Splicing : Fast-db (Paris)GSHG0025435
Alternative Splicing GalleryENSG00000112149
Gene ExpressionCD83 [ NCBI-GEO ]     CD83 [ SEEK ]   CD83 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)9308
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ01151 (Uniprot)
NextProtQ01151  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ01151
Splice isoforms : SwissVarQ01151 (Swissvar)
PhosPhoSitePlusQ01151
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
DMDM Disease mutations9308
Blocks (Seattle)CD83
Human Protein AtlasENSG00000112149
Peptide AtlasQ01151
HPRD05170
IPIIPI00006003   IPI00845356   
Protein Interaction databases
DIP (DOE-UCLA)Q01151
IntAct (EBI)Q01151
FunCoupENSG00000112149
BioGRIDCD83
IntegromeDBCD83
STRING (EMBL)CD83
ZODIACCD83
Ontologies - Pathways
QuickGOQ01151
Ontology : AmiGOregulation of cytokine production  plasma membrane  integral component of plasma membrane  defense response  humoral immune response  signal transduction  external side of plasma membrane  response to organic cyclic compound  negative regulation of interleukin-4 production  positive regulation of interleukin-10 production  positive regulation of interleukin-2 production  positive regulation of CD4-positive, alpha-beta T cell differentiation  
Ontology : EGO-EBIregulation of cytokine production  plasma membrane  integral component of plasma membrane  defense response  humoral immune response  signal transduction  external side of plasma membrane  response to organic cyclic compound  negative regulation of interleukin-4 production  positive regulation of interleukin-10 production  positive regulation of interleukin-2 production  positive regulation of CD4-positive, alpha-beta T cell differentiation  
Protein Interaction DatabaseCD83
Atlas of Cancer Signalling NetworkCD83
Wikipedia pathwaysCD83
Orthology - Evolution
OrthoDB9308
GeneTree (enSembl)ENSG00000112149
Phylogenetic Trees/Animal Genes : TreeFamCD83
Homologs : HomoloGeneCD83
Homology/Alignments : Family Browser (UCSC)CD83
Gene fusions - Rearrangements
Fusion: TCGACD83 6p23 LAMA2 6q22.33 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerCD83 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD83
dbVarCD83
ClinVarCD83
1000_GenomesCD83 
Exome Variant ServerCD83
Exome Aggregation Consortium (ExAC)ENSG00000112149
SNP (GeneSNP Utah)CD83
SNP : HGBaseCD83
Genetic variants : HAPMAPCD83
Genomic Variants (DGV)CD83 [DGVbeta]
Mutations
ICGC Data PortalCD83 
TCGA Data PortalCD83 
Tumor PortalCD83
TCGA Copy Number PortalCD83
Somatic Mutations in Cancer : COSMICCD83 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD83
DgiDB (Drug Gene Interaction Database)CD83
DoCM (Curated mutations)CD83 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD83 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)6:14117865-14137148
CONAN: Copy Number AnalysisCD83 
Mutations and Diseases : HGMDCD83
OMIM604534   
MedgenCD83
NextProtQ01151 [Medical]
TSGene9308
GENETestsCD83
Huge Navigator CD83 [HugePedia]  CD83 [HugeCancerGEM]
snp3D : Map Gene to Disease9308
BioCentury BCIQCD83
General knowledge
Chemical/Protein Interactions : CTD9308
Chemical/Pharm GKB GenePA26241
Clinical trialCD83
Other databases
Probes
Litterature
PubMed73 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD83
GoPubMedCD83
iHOPCD83
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jan 16 18:18:27 CET 2016

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.