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CD84 (CD84 molecule)

Identity

Alias_namesCD84 antigen (leukocyte antigen)
CD84 molecule
Alias_symbol (synonym)SLAMF5
hCD84
mCD84
Other aliasLY9B
HGNC (Hugo) CD84
LocusID (NCBI) 8832
Atlas_Id 56016
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 160541094 and ends at 160579516 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CD84 (1q23.3) / TRIM39 (6p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD84   1704
Cards
Entrez_Gene (NCBI)CD84  8832  CD84 molecule
AliasesLY9B; SLAMF5; hCD84; mCD84
GeneCards (Weizmann)CD84
Ensembl hg19 (Hinxton)ENSG00000066294 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000066294 [Gene_View]  chr1:160541094-160579516 [Contig_View]  CD84 [Vega]
ICGC DataPortalENSG00000066294
TCGA cBioPortalCD84
AceView (NCBI)CD84
Genatlas (Paris)CD84
WikiGenes8832
SOURCE (Princeton)CD84
Genetics Home Reference (NIH)CD84
Genomic and cartography
GoldenPath hg38 (UCSC)CD84  -     chr1:160541094-160579516 -  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD84  -     1q23.3   [Description]    (hg19-Feb_2009)
EnsemblCD84 - 1q23.3 [CytoView hg19]  CD84 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBICD84 [Mapview hg19]  CD84 [Mapview hg38]
OMIM604513   
Gene and transcription
Genbank (Entrez)AF054815 AF054816 AF054817 AF054818 AJ223324
RefSeq transcript (Entrez)NM_001184879 NM_001184881 NM_001184882 NM_001330742 NM_003874
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD84
Cluster EST : UnigeneHs.398093 [ NCBI ]
CGAP (NCI)Hs.398093
Alternative Splicing GalleryENSG00000066294
Gene ExpressionCD84 [ NCBI-GEO ]   CD84 [ EBI - ARRAY_EXPRESS ]   CD84 [ SEEK ]   CD84 [ MEM ]
Gene Expression Viewer (FireBrowse)CD84 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8832
GTEX Portal (Tissue expression)CD84
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UIB8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UIB8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UIB8
Splice isoforms : SwissVarQ9UIB8
PhosPhoSitePlusQ9UIB8
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)CD84
DMDM Disease mutations8832
Blocks (Seattle)CD84
PDB (SRS)2PKD   
PDB (PDBSum)2PKD   
PDB (IMB)2PKD   
PDB (RSDB)2PKD   
Structural Biology KnowledgeBase2PKD   
SCOP (Structural Classification of Proteins)2PKD   
CATH (Classification of proteins structures)2PKD   
SuperfamilyQ9UIB8
Human Protein AtlasENSG00000066294
Peptide AtlasQ9UIB8
HPRD05151
IPIIPI00099239   IPI00640682   IPI00022039   IPI00383787   IPI00155629   IPI00644930   IPI00787834   
Protein Interaction databases
DIP (DOE-UCLA)Q9UIB8
IntAct (EBI)Q9UIB8
FunCoupENSG00000066294
BioGRIDCD84
STRING (EMBL)CD84
ZODIACCD84
Ontologies - Pathways
QuickGOQ9UIB8
Ontology : AmiGOadaptive immune response  protein binding  plasma membrane  integral component of plasma membrane  defense response  homophilic cell adhesion via plasma membrane adhesion molecules  negative regulation of granulocyte macrophage colony-stimulating factor production  negative regulation of interleukin-18 production  negative regulation of mast cell activation  negative regulation of mast cell degranulation  innate immune response  leukocyte migration  extracellular exosome  regulation of store-operated calcium entry  
Ontology : EGO-EBIadaptive immune response  protein binding  plasma membrane  integral component of plasma membrane  defense response  homophilic cell adhesion via plasma membrane adhesion molecules  negative regulation of granulocyte macrophage colony-stimulating factor production  negative regulation of interleukin-18 production  negative regulation of mast cell activation  negative regulation of mast cell degranulation  innate immune response  leukocyte migration  extracellular exosome  regulation of store-operated calcium entry  
NDEx NetworkCD84
Atlas of Cancer Signalling NetworkCD84
Wikipedia pathwaysCD84
Orthology - Evolution
OrthoDB8832
GeneTree (enSembl)ENSG00000066294
Phylogenetic Trees/Animal Genes : TreeFamCD84
HOVERGENQ9UIB8
HOGENOMQ9UIB8
Homologs : HomoloGeneCD84
Homology/Alignments : Family Browser (UCSC)CD84
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD84 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD84
dbVarCD84
ClinVarCD84
1000_GenomesCD84 
Exome Variant ServerCD84
ExAC (Exome Aggregation Consortium)CD84 (select the gene name)
Genetic variants : HAPMAP8832
Genomic Variants (DGV)CD84 [DGVbeta]
DECIPHERCD84 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD84 
Mutations
ICGC Data PortalCD84 
TCGA Data PortalCD84 
Broad Tumor PortalCD84
OASIS PortalCD84 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD84  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD84
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD84
DgiDB (Drug Gene Interaction Database)CD84
DoCM (Curated mutations)CD84 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD84 (select a term)
intoGenCD84
Cancer3DCD84(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604513   
Orphanet
MedgenCD84
Genetic Testing Registry CD84
NextProtQ9UIB8 [Medical]
TSGene8832
GENETestsCD84
Target ValidationCD84
Huge Navigator CD84 [HugePedia]
snp3D : Map Gene to Disease8832
BioCentury BCIQCD84
ClinGenCD84
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8832
Chemical/Pharm GKB GenePA26242
Clinical trialCD84
Miscellaneous
canSAR (ICR)CD84 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD84
EVEXCD84
GoPubMedCD84
iHOPCD84
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:57:19 CEST 2017

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