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CD93 (CD93 molecule)

Identity

Alias_namesMXRA4
C1QR1
matrix-remodelling associated 4
complement component 1, q subcomponent, receptor 1
CD93 antigen
Alias_symbol (synonym)C1qRP
C1qR(P)
dJ737E23.1
CDw93
ECSM3
Other alias
HGNC (Hugo) CD93
LocusID (NCBI) 22918
Atlas_Id 53427
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 23079356 and ends at 23086340 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CD93 (20p11.21) / RPL14 (3p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD93   15855
Cards
Entrez_Gene (NCBI)CD93  22918  CD93 molecule
AliasesC1QR1; C1qR(P); C1qRP; CDw93; 
ECSM3; MXRA4; dJ737E23.1
GeneCards (Weizmann)CD93
Ensembl hg19 (Hinxton)ENSG00000125810 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125810 [Gene_View]  chr20:23079356-23086340 [Contig_View]  CD93 [Vega]
ICGC DataPortalENSG00000125810
TCGA cBioPortalCD93
AceView (NCBI)CD93
Genatlas (Paris)CD93
WikiGenes22918
SOURCE (Princeton)CD93
Genetics Home Reference (NIH)CD93
Genomic and cartography
GoldenPath hg38 (UCSC)CD93  -     chr20:23079356-23086340 -  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD93  -     20p11.21   [Description]    (hg19-Feb_2009)
EnsemblCD93 - 20p11.21 [CytoView hg19]  CD93 - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBICD93 [Mapview hg19]  CD93 [Mapview hg38]
OMIM120577   
Gene and transcription
Genbank (Entrez)AB209895 AJ295142 AK056764 AK299957 AM393282
RefSeq transcript (Entrez)NM_012072
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD93
Cluster EST : UnigeneHs.97199 [ NCBI ]
CGAP (NCI)Hs.97199
Alternative Splicing GalleryENSG00000125810
Gene ExpressionCD93 [ NCBI-GEO ]   CD93 [ EBI - ARRAY_EXPRESS ]   CD93 [ SEEK ]   CD93 [ MEM ]
Gene Expression Viewer (FireBrowse)CD93 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22918
GTEX Portal (Tissue expression)CD93
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPY3
Splice isoforms : SwissVarQ9NPY3
PhosPhoSitePlusQ9NPY3
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    C_TYPE_LECTIN_2 (PS50041)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_CA (PS01187)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    cEGF    CTDL_fold    EGF-like_Ca-bd_dom    EGF-like_CS    EGF-like_dom    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    Growth_fac_rcpt_   
Domain families : Pfam (Sanger)cEGF (PF12662)    EGF_CA (PF07645)    Lectin_C (PF00059)   
Domain families : Pfam (NCBI)pfam12662    pfam07645    pfam00059   
Domain families : Smart (EMBL)CLECT (SM00034)  EGF (SM00181)  EGF_CA (SM00179)  
Conserved Domain (NCBI)CD93
DMDM Disease mutations22918
Blocks (Seattle)CD93
SuperfamilyQ9NPY3
Human Protein AtlasENSG00000125810
Peptide AtlasQ9NPY3
HPRD00396
IPIIPI00299485   IPI00909029   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPY3
IntAct (EBI)Q9NPY3
FunCoupENSG00000125810
BioGRIDCD93
STRING (EMBL)CD93
ZODIACCD93
Ontologies - Pathways
QuickGOQ9NPY3
Ontology : AmiGOcomplement component C1q binding  receptor activity  calcium ion binding  protein binding  plasma membrane  plasma membrane  phagocytosis  cell surface  integral component of membrane  viral process  single organismal cell-cell adhesion  carbohydrate binding  secretory granule membrane  extracellular matrix  specific granule membrane  macrophage activation  neutrophil degranulation  tertiary granule membrane  ficolin-1-rich granule membrane  
Ontology : EGO-EBIcomplement component C1q binding  receptor activity  calcium ion binding  protein binding  plasma membrane  plasma membrane  phagocytosis  cell surface  integral component of membrane  viral process  single organismal cell-cell adhesion  carbohydrate binding  secretory granule membrane  extracellular matrix  specific granule membrane  macrophage activation  neutrophil degranulation  tertiary granule membrane  ficolin-1-rich granule membrane  
NDEx NetworkCD93
Atlas of Cancer Signalling NetworkCD93
Wikipedia pathwaysCD93
Orthology - Evolution
OrthoDB22918
GeneTree (enSembl)ENSG00000125810
Phylogenetic Trees/Animal Genes : TreeFamCD93
HOVERGENQ9NPY3
HOGENOMQ9NPY3
Homologs : HomoloGeneCD93
Homology/Alignments : Family Browser (UCSC)CD93
Gene fusions - Rearrangements
Fusion Cancer (Beijing)CD93 [20p11.21]  -  RPL14 [3p22.1]  [FUSC004461]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD93 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD93
dbVarCD93
ClinVarCD93
1000_GenomesCD93 
Exome Variant ServerCD93
ExAC (Exome Aggregation Consortium)CD93 (select the gene name)
Genetic variants : HAPMAP22918
Genomic Variants (DGV)CD93 [DGVbeta]
DECIPHERCD93 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD93 
Mutations
ICGC Data PortalCD93 
TCGA Data PortalCD93 
Broad Tumor PortalCD93
OASIS PortalCD93 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD93  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD93
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD93
DgiDB (Drug Gene Interaction Database)CD93
DoCM (Curated mutations)CD93 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD93 (select a term)
intoGenCD93
Cancer3DCD93(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM120577   
Orphanet
MedgenCD93
Genetic Testing Registry CD93
NextProtQ9NPY3 [Medical]
TSGene22918
GENETestsCD93
Huge Navigator CD93 [HugePedia]
snp3D : Map Gene to Disease22918
BioCentury BCIQCD93
ClinGenCD93
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22918
Chemical/Pharm GKB GenePA25627
Clinical trialCD93
Miscellaneous
canSAR (ICR)CD93 (select the gene name)
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD93
EVEXCD93
GoPubMedCD93
iHOPCD93
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:09:44 CEST 2017

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