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CD96 (CD96 molecule)

Identity

Alias_namesCD96 antigen
Alias_symbol (synonym)TACTILE
Other alias
HGNC (Hugo) CD96
LocusID (NCBI) 10225
Atlas_Id 49991
Location 3q13.13  [Link to chromosome band 3q13]
Location_base_pair Starts at 111542079 and ends at 111607078 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PHLDB2 (3q13.2) / CD96 (3q13.13)ZBTB20 (3q13.31) / CD96 (3q13.13)PHLDB2 3q13.2 / CD96 3q13.13
ZBTB20 3q13.31 / CD96 3q13.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD96   16892
Cards
Entrez_Gene (NCBI)CD96  10225  CD96 molecule
AliasesTACTILE
GeneCards (Weizmann)CD96
Ensembl hg19 (Hinxton)ENSG00000153283 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153283 [Gene_View]  chr3:111542079-111607078 [Contig_View]  CD96 [Vega]
ICGC DataPortalENSG00000153283
TCGA cBioPortalCD96
AceView (NCBI)CD96
Genatlas (Paris)CD96
WikiGenes10225
SOURCE (Princeton)CD96
Genetics Home Reference (NIH)CD96
Genomic and cartography
GoldenPath hg38 (UCSC)CD96  -     chr3:111542079-111607078 +  3q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD96  -     3q13.13   [Description]    (hg19-Feb_2009)
EnsemblCD96 - 3q13.13 [CytoView hg19]  CD96 - 3q13.13 [CytoView hg38]
Mapping of homologs : NCBICD96 [Mapview hg19]  CD96 [Mapview hg38]
OMIM211750   606037   
Gene and transcription
Genbank (Entrez)AK290719 AK315237 AL833681 AW341041 BC020749
RefSeq transcript (Entrez)NM_001318889 NM_005816 NM_198196
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD96
Cluster EST : UnigeneHs.142023 [ NCBI ]
CGAP (NCI)Hs.142023
Alternative Splicing GalleryENSG00000153283
Gene ExpressionCD96 [ NCBI-GEO ]   CD96 [ EBI - ARRAY_EXPRESS ]   CD96 [ SEEK ]   CD96 [ MEM ]
Gene Expression Viewer (FireBrowse)CD96 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10225
GTEX Portal (Tissue expression)CD96
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40200   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP40200  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40200
Splice isoforms : SwissVarP40200
PhosPhoSitePlusP40200
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)CD96
DMDM Disease mutations10225
Blocks (Seattle)CD96
SuperfamilyP40200
Human Protein AtlasENSG00000153283
Peptide AtlasP40200
HPRD06916
IPIIPI00396403   IPI00027604   IPI00793855   IPI00946779   IPI00946305   IPI00945815   
Protein Interaction databases
DIP (DOE-UCLA)P40200
IntAct (EBI)P40200
FunCoupENSG00000153283
BioGRIDCD96
STRING (EMBL)CD96
ZODIACCD96
Ontologies - Pathways
QuickGOP40200
Ontology : AmiGOcytokine production involved in inflammatory response  negative regulation of natural killer cell cytokine production  cytoplasm  plasma membrane  integral component of plasma membrane  adherens junction  immune response  cell adhesion  cell-matrix adhesion  response to lipopolysaccharide  negative regulation of interferon-gamma production  regulation of immune response  
Ontology : EGO-EBIcytokine production involved in inflammatory response  negative regulation of natural killer cell cytokine production  cytoplasm  plasma membrane  integral component of plasma membrane  adherens junction  immune response  cell adhesion  cell-matrix adhesion  response to lipopolysaccharide  negative regulation of interferon-gamma production  regulation of immune response  
NDEx NetworkCD96
Atlas of Cancer Signalling NetworkCD96
Wikipedia pathwaysCD96
Orthology - Evolution
OrthoDB10225
GeneTree (enSembl)ENSG00000153283
Phylogenetic Trees/Animal Genes : TreeFamCD96
HOVERGENP40200
HOGENOMP40200
Homologs : HomoloGeneCD96
Homology/Alignments : Family Browser (UCSC)CD96
Gene fusions - Rearrangements
Fusion : MitelmanPHLDB2/CD96 [3q13.2/3q13.13]  [t(3;3)(q13;q13)]  
Fusion : MitelmanZBTB20/CD96 [3q13.31/3q13.13]  [t(3;3)(q13;q13)]  
Fusion: TCGAPHLDB2 3q13.2 CD96 3q13.13 HNSC
Fusion: TCGAZBTB20 3q13.31 CD96 3q13.13 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD96 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD96
dbVarCD96
ClinVarCD96
1000_GenomesCD96 
Exome Variant ServerCD96
ExAC (Exome Aggregation Consortium)CD96 (select the gene name)
Genetic variants : HAPMAP10225
Genomic Variants (DGV)CD96 [DGVbeta]
DECIPHERCD96 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD96 
Mutations
ICGC Data PortalCD96 
TCGA Data PortalCD96 
Broad Tumor PortalCD96
OASIS PortalCD96 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD96  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD96
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CD96
DgiDB (Drug Gene Interaction Database)CD96
DoCM (Curated mutations)CD96 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD96 (select a term)
intoGenCD96
Cancer3DCD96(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM211750    606037   
Orphanet1062   
MedgenCD96
Genetic Testing Registry CD96
NextProtP40200 [Medical]
TSGene10225
GENETestsCD96
Target ValidationCD96
Huge Navigator CD96 [HugePedia]
snp3D : Map Gene to Disease10225
BioCentury BCIQCD96
ClinGenCD96
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10225
Chemical/Pharm GKB GenePA437
Clinical trialCD96
Miscellaneous
canSAR (ICR)CD96 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD96
EVEXCD96
GoPubMedCD96
iHOPCD96
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:57:20 CEST 2017

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