Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CD99 (CD99 molecule)

Identity

Other namesHBA71
MIC2
MIC2X
MIC2Y
MSK5X
HGNC (Hugo) CD99
LocusID (NCBI) 4267
Location Xp22.33
Location_base_pair Starts at 2609228 and ends at 2659350 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas)

Solid Tumors AmeloblastomID5945 MedulloblastomaID5065

External links

Nomenclature
HGNC (Hugo)CD99   7082
Cards
Entrez_Gene (NCBI)CD99  4267  CD99 molecule
GeneCards (Weizmann)CD99
Ensembl (Hinxton)ENSG00000002586 [Gene_View]  chrX:2609228-2659350 [Contig_View]  CD99 [Vega]
ICGC DataPortalENSG00000002586
cBioPortalCD99
AceView (NCBI)CD99
Genatlas (Paris)CD99
WikiGenes4267
SOURCE (Princeton)NM_001122898 NM_001277710 NM_002414
Genomic and cartography
GoldenPath (UCSC)CD99  -  Xp22.33   chrX:2609228-2659350 +  Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblCD99 - Xp22.33 [CytoView]
Mapping of homologs : NCBICD99 [Mapview]
OMIM313470   450000   
Gene and transcription
Genbank (Entrez)AK313617 BC002584 BC003147 BC010109 BC021620
RefSeq transcript (Entrez)NM_001122898 NM_001277710 NM_002414
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_000024 NC_018934 NG_009174 NT_167197 NT_167205 NW_001842356 NW_004929438
Consensus coding sequences : CCDS (NCBI)CD99
Cluster EST : UnigeneHs.653349 [ NCBI ]
CGAP (NCI)Hs.653349
Alternative Splicing : Fast-db (Paris)GSHG0032979
Alternative Splicing GalleryENSG00000002586
Gene ExpressionCD99 [ NCBI-GEO ]     CD99 [ SEEK ]   CD99 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP14209 (Uniprot)
NextProtP14209  [Medical]
With graphics : InterProP14209
Splice isoforms : SwissVarP14209 (Swissvar)
Domains : Interpro (EBI)CD99L2 [organisation]  
Related proteins : CluSTrP14209
Domain families : Pfam (Sanger)CD99L2 (PF12301)   
Domain families : Pfam (NCBI)pfam12301   
DMDM Disease mutations4267
Blocks (Seattle)P14209
Human Protein AtlasENSG00000002586 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP14209
HPRD02434
IPIIPI00253036   IPI00645716   IPI00642948   IPI00220117   IPI00644034   IPI00643531   
Protein Interaction databases
DIP (DOE-UCLA)P14209
IntAct (EBI)P14209
FunCoupENSG00000002586
BioGRIDCD99
InParanoidP14209
Interologous Interaction database P14209
IntegromeDBCD99
STRING (EMBL)CD99
Ontologies - Pathways
Ontology : AmiGOcytoplasm  plasma membrane  integral component of plasma membrane  cell adhesion  
Ontology : EGO-EBIcytoplasm  plasma membrane  integral component of plasma membrane  cell adhesion  
Pathways : KEGGCell adhesion molecules (CAMs)    Leukocyte transendothelial migration   
Protein Interaction DatabaseCD99
Wikipedia pathwaysCD99
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CD99
snp3D : Map Gene to Disease4267
SNP (GeneSNP Utah)CD99
SNP : HGBaseCD99
Genetic variants : HAPMAPCD99
Exome VariantCD99
1000_GenomesCD99 
ICGC programENSG00000002586 
Somatic Mutations in Cancer : COSMICCD99 
CONAN: Copy Number AnalysisCD99 
Mutations and Diseases : HGMDCD99
Mutations and Diseases : intOGenCD99
Genomic VariantsCD99  CD99 [DGVbeta]
dbVarCD99
ClinVarCD99
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM313470    450000   
MedgenCD99
GENETestsCD99
Disease Genetic AssociationCD99
Huge Navigator CD99 [HugePedia]  CD99 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCD99
Homology/Alignments : Family Browser (UCSC)CD99
Phylogenetic Trees/Animal Genes : TreeFamCD99
Chemical/Protein Interactions : CTD4267
Chemical/Pharm GKB GenePA30804
Clinical trialCD99
Cancer Resource (Charite)ENSG00000002586
Other databases
Probes
Litterature
PubMed80 Pubmed reference(s) in Entrez
CoreMineCD99
iHOPCD99
OncoSearchCD99
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:41:31 CEST 2014

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jlhuret@AtlasGeneticsOncology.org.