Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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CD99 (CD99 molecule)


Other namesHBA71
HGNC (Hugo) CD99
LocusID (NCBI) 4267
Location Xp22.33
Location_base_pair Starts at 2609228 and ends at 2659350 bp from pter ( according to hg19-Feb_2009)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



Other Solid tumors implicated (Data extracted from papers in the Atlas)

Solid Tumors AmeloblastomID5945 MedulloblastomaID5065

External links

HGNC (Hugo)CD99   7082
Entrez_Gene (NCBI)CD99  4267  CD99 molecule
GeneCards (Weizmann)CD99
Ensembl hg19 (Hinxton)ENSG00000002586 [Gene_View]  chrX:2609228-2659350 [Contig_View]  CD99 [Vega]
Ensembl hg38 (Hinxton)ENSG00000002586 [Gene_View]  chrX:2609228-2659350 [Contig_View]  CD99 [Vega]
ICGC DataPortalENSG00000002586
AceView (NCBI)CD99
Genatlas (Paris)CD99
SOURCE (Princeton)CD99
Genomic and cartography
GoldenPath hg19 (UCSC)CD99  -     chrX:2609228-2659350 +  Xp22.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CD99  -     Xp22.33   [Description]    (hg38-Dec_2013)
EnsemblCD99 - Xp22.33 [CytoView hg19]  CD99 - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBICD99 [Mapview hg19]  CD99 [Mapview hg38]
OMIM313470   450000   
Gene and transcription
Genbank (Entrez)AK313617 BC002584 BC003147 BC010109 BC021620
RefSeq transcript (Entrez)NM_001122898 NM_001277710 NM_002414
RefSeq genomic (Entrez)NC_000023 NC_000024 NC_018934 NG_009174 NT_167197 NT_167205 NW_004929438
Consensus coding sequences : CCDS (NCBI)CD99
Cluster EST : UnigeneHs.653349 [ NCBI ]
CGAP (NCI)Hs.653349
Alternative Splicing : Fast-db (Paris)GSHG0032979
Alternative Splicing GalleryENSG00000002586
Gene ExpressionCD99 [ NCBI-GEO ]     CD99 [ SEEK ]   CD99 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP14209 (Uniprot)
NextProtP14209  [Medical]
With graphics : InterProP14209
Splice isoforms : SwissVarP14209 (Swissvar)
Domains : Interpro (EBI)CD99L2   
Related proteins : CluSTrP14209
Domain families : Pfam (Sanger)CD99L2 (PF12301)   
Domain families : Pfam (NCBI)pfam12301   
DMDM Disease mutations4267
Blocks (Seattle)P14209
Human Protein AtlasENSG00000002586
Peptide AtlasP14209
IPIIPI00253036   IPI00645716   IPI00642948   IPI00220117   IPI00644034   IPI00643531   
Protein Interaction databases
IntAct (EBI)P14209
Ontologies - Pathways
Ontology : AmiGOcytoplasm  plasma membrane  integral component of plasma membrane  focal adhesion  cell adhesion  
Ontology : EGO-EBIcytoplasm  plasma membrane  integral component of plasma membrane  focal adhesion  cell adhesion  
Pathways : KEGGCell adhesion molecules (CAMs)    Leukocyte transendothelial migration   
Protein Interaction DatabaseCD99
DoCM (Curated mutations)CD99
Wikipedia pathwaysCD99
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCD99 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD99
Exome Variant ServerCD99
SNP (GeneSNP Utah)CD99
SNP : HGBaseCD99
Genetic variants : HAPMAPCD99
Genomic Variants (DGV)CD99 [DGVbeta]
ICGC Data PortalENSG00000002586 
Somatic Mutations in Cancer : COSMICCD99 
CONAN: Copy Number AnalysisCD99 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
DECIPHER (Syndromes)X:2609228-2659350
Mutations and Diseases : HGMDCD99
OMIM313470    450000   
NextProtP14209 [Medical]
Disease Genetic AssociationCD99
Huge Navigator CD99 [HugePedia]  CD99 [HugeCancerGEM]
snp3D : Map Gene to Disease4267
DGIdb (Drug Gene Interaction db)CD99
General knowledge
Homologs : HomoloGeneCD99
Homology/Alignments : Family Browser (UCSC)CD99
Phylogenetic Trees/Animal Genes : TreeFamCD99
Chemical/Protein Interactions : CTD4267
Chemical/Pharm GKB GenePA30804
Clinical trialCD99
Cancer Resource (Charite)ENSG00000002586
Other databases
PubMed85 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI


Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 14:59:46 CET 2015

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