Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CD99L2 (CD99 molecule like 2)

Identity

Alias (NCBI)CD99B
MIC2L1
HGNC (Hugo) CD99L2
HGNC Alias symbCD99B
HGNC Previous nameMIC2L1
HGNC Previous nameMIC2 like 1
 CD99 antigen-like 2
 CD99 molecule-like 2
LocusID (NCBI) 83692
Atlas_Id 47498
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 150766336 and ends at 150898668 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD99L2 (Xq28) / ARHGAP36 (Xq26.1)CD99L2 (Xq28) / BRD4 (19p13.12)CD99L2 (Xq28) / CD99L2 (Xq28)
CD99L2 (Xq28) / CXorf66 (Xq27.1)CD99L2 (Xq28) / DENR (12q24.31)CD99L2 (Xq28) / MYH7 (14q11.2)
CD99L2 (Xq28) / PACRGL (4p15.31)CD99L2 (Xq28) / STK10 (5q35.1)TTC28 (22q12.1) / CD99L2 (Xq28)
CD99L2 Xq28 / ARHGAP36 Xq26.1CD99L2 Xq28 / CXorf66 Xq27.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(X;X)(q26;q28) CD99L2/ARHGAP36
t(X;X)(q27;q28) CD99L2/CXorf66
t(X;22)(q28;q12) TTC28/CD99L2

External links

Nomenclature
HGNC (Hugo)CD99L2   18237
Cards
Entrez_Gene (NCBI)CD99L2    CD99 molecule like 2
AliasesCD99B; MIC2L1
GeneCards (Weizmann)CD99L2
Ensembl hg19 (Hinxton)ENSG00000102181 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102181 [Gene_View]  ENSG00000102181 [Sequence]  chrX:150766336-150898668 [Contig_View]  CD99L2 [Vega]
ICGC DataPortalENSG00000102181
TCGA cBioPortalCD99L2
AceView (NCBI)CD99L2
Genatlas (Paris)CD99L2
SOURCE (Princeton)CD99L2
Genetics Home Reference (NIH)CD99L2
Genomic and cartography
GoldenPath hg38 (UCSC)CD99L2  -     chrX:150766336-150898668 -  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CD99L2  -     Xq28   [Description]    (hg19-Feb_2009)
GoldenPathCD99L2 - Xq28 [CytoView hg19]  CD99L2 - Xq28 [CytoView hg38]
ImmunoBaseENSG00000102181
genome Data Viewer NCBICD99L2 [Mapview hg19]  
OMIM300846   
Gene and transcription
Genbank (Entrez)AK023776 AK024278 AK098810 AK125020 AK126859
RefSeq transcript (Entrez)NM_001184808 NM_001242614 NM_031462 NM_134445 NM_134446
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CD99L2
Alternative Splicing GalleryENSG00000102181
Gene ExpressionCD99L2 [ NCBI-GEO ]   CD99L2 [ EBI - ARRAY_EXPRESS ]   CD99L2 [ SEEK ]   CD99L2 [ MEM ]
Gene Expression Viewer (FireBrowse)CD99L2 [ Firebrowse - Broad ]
GenevisibleExpression of CD99L2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83692
GTEX Portal (Tissue expression)CD99L2
Human Protein AtlasENSG00000102181-CD99L2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCZ2
Splice isoforms : SwissVarQ8TCZ2
PhosPhoSitePlusQ8TCZ2
Domains : Interpro (EBI)CD99L2   
Domain families : Pfam (Sanger)CD99L2 (PF12301)   
Domain families : Pfam (NCBI)pfam12301   
Conserved Domain (NCBI)CD99L2
Blocks (Seattle)CD99L2
SuperfamilyQ8TCZ2
Human Protein Atlas [tissue]ENSG00000102181-CD99L2 [tissue]
Peptide AtlasQ8TCZ2
IPIIPI00943257   IPI00177578   IPI00152488   IPI00152138   IPI00152491   IPI00909044   IPI00185662   IPI00910291   IPI00844498   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCZ2
IntAct (EBI)Q8TCZ2
BioGRIDCD99L2
STRING (EMBL)CD99L2
ZODIACCD99L2
Ontologies - Pathways
QuickGOQ8TCZ2
Ontology : AmiGOprotein binding  plasma membrane  adherens junction  focal adhesion  cell adhesion  cell surface  integral component of membrane  diapedesis  positive regulation of neutrophil extravasation  positive regulation of T cell extravasation  
Ontology : EGO-EBIprotein binding  plasma membrane  adherens junction  focal adhesion  cell adhesion  cell surface  integral component of membrane  diapedesis  positive regulation of neutrophil extravasation  positive regulation of T cell extravasation  
NDEx NetworkCD99L2
Atlas of Cancer Signalling NetworkCD99L2
Wikipedia pathwaysCD99L2
Orthology - Evolution
OrthoDB83692
GeneTree (enSembl)ENSG00000102181
Phylogenetic Trees/Animal Genes : TreeFamCD99L2
HOGENOMQ8TCZ2
Homologs : HomoloGeneCD99L2
Homology/Alignments : Family Browser (UCSC)CD99L2
Gene fusions - Rearrangements
Fusion : MitelmanCD99L2/ARHGAP36 [Xq28/Xq26.1]  
Fusion : MitelmanCD99L2/CXorf66 [Xq28/Xq27.1]  
Fusion : MitelmanTTC28/CD99L2 [22q12.1/Xq28]  
Fusion PortalCD99L2 Xq28 ARHGAP36 Xq26.1 BRCA
Fusion PortalCD99L2 Xq28 CXorf66 Xq27.1 BRCA
Fusion : QuiverCD99L2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD99L2 [hg38]
dbVarCD99L2
ClinVarCD99L2
MonarchCD99L2
1000_GenomesCD99L2 
Exome Variant ServerCD99L2
GNOMAD BrowserENSG00000102181
Varsome BrowserCD99L2
Genomic Variants (DGV)CD99L2 [DGVbeta]
DECIPHERCD99L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCD99L2 
Mutations
ICGC Data PortalCD99L2 
TCGA Data PortalCD99L2 
Broad Tumor PortalCD99L2
OASIS PortalCD99L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD99L2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCD99L2
Mutations and Diseases : HGMDCD99L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CD99L2
DgiDB (Drug Gene Interaction Database)CD99L2
DoCM (Curated mutations)CD99L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD99L2 (select a term)
intoGenCD99L2
Cancer3DCD99L2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300846   
Orphanet
DisGeNETCD99L2
MedgenCD99L2
Genetic Testing Registry CD99L2
NextProtQ8TCZ2 [Medical]
GENETestsCD99L2
Target ValidationCD99L2
Huge Navigator CD99L2 [HugePedia]
ClinGenCD99L2
Clinical trials, drugs, therapy
MyCancerGenomeCD99L2
Protein Interactions : CTD
Pharm GKB GenePA30805
PharosQ8TCZ2
Clinical trialCD99L2
Miscellaneous
canSAR (ICR)CD99L2 (select the gene name)
HarmonizomeCD99L2
DataMed IndexCD99L2
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCD99L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:09:11 CET 2021
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.