Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CD99L2 (CD99 molecule like 2)

Identity

Alias_namesMIC2L1
MIC2 like 1
CD99 antigen-like 2
CD99 molecule-like 2
Alias_symbol (synonym)CD99B
Other alias
HGNC (Hugo) CD99L2
LocusID (NCBI) 83692
Atlas_Id 47498
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 149934809 and ends at 150067289 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CD99L2 (Xq28) / ARHGAP36 (Xq26.1)CD99L2 (Xq28) / BRD4 (19p13.12)CD99L2 (Xq28) / CD99L2 (Xq28)
CD99L2 (Xq28) / CXorf66 (Xq27.1)CD99L2 (Xq28) / DENR (12q24.31)CD99L2 (Xq28) / MYH7 (14q11.2)
CD99L2 (Xq28) / PACRGL (4p15.31)CD99L2 (Xq28) / STK10 (5q35.1)TTC28 (22q12.1) / CD99L2 (Xq28)
CD99L2 Xq28 / ARHGAP36 Xq26.1CD99L2 Xq28 / CXorf66 Xq27.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CD99L2   18237
Cards
Entrez_Gene (NCBI)CD99L2  83692  CD99 molecule like 2
AliasesCD99B; MIC2L1
GeneCards (Weizmann)CD99L2
Ensembl hg19 (Hinxton)ENSG00000102181 [Gene_View]  chrX:149934809-150067289 [Contig_View]  CD99L2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000102181 [Gene_View]  chrX:149934809-150067289 [Contig_View]  CD99L2 [Vega]
ICGC DataPortalENSG00000102181
TCGA cBioPortalCD99L2
AceView (NCBI)CD99L2
Genatlas (Paris)CD99L2
WikiGenes83692
SOURCE (Princeton)CD99L2
Genetics Home Reference (NIH)CD99L2
Genomic and cartography
GoldenPath hg19 (UCSC)CD99L2  -     chrX:149934809-150067289 -  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CD99L2  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblCD99L2 - Xq28 [CytoView hg19]  CD99L2 - Xq28 [CytoView hg38]
Mapping of homologs : NCBICD99L2 [Mapview hg19]  CD99L2 [Mapview hg38]
OMIM300846   
Gene and transcription
Genbank (Entrez)AK023776 AK024278 AK098810 AK125020 AK126859
RefSeq transcript (Entrez)NM_001184808 NM_001242614 NM_031462 NM_134445 NM_134446
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_021320 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)CD99L2
Cluster EST : UnigeneHs.522805 [ NCBI ]
CGAP (NCI)Hs.522805
Alternative Splicing GalleryENSG00000102181
Gene ExpressionCD99L2 [ NCBI-GEO ]   CD99L2 [ EBI - ARRAY_EXPRESS ]   CD99L2 [ SEEK ]   CD99L2 [ MEM ]
Gene Expression Viewer (FireBrowse)CD99L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83692
GTEX Portal (Tissue expression)CD99L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCZ2
Splice isoforms : SwissVarQ8TCZ2
PhosPhoSitePlusQ8TCZ2
Domains : Interpro (EBI)CD99L2   
Domain families : Pfam (Sanger)CD99L2 (PF12301)   
Domain families : Pfam (NCBI)pfam12301   
Conserved Domain (NCBI)CD99L2
DMDM Disease mutations83692
Blocks (Seattle)CD99L2
SuperfamilyQ8TCZ2
Human Protein AtlasENSG00000102181
Peptide AtlasQ8TCZ2
IPIIPI00943257   IPI00177578   IPI00152488   IPI00152138   IPI00152491   IPI00909044   IPI00185662   IPI00910291   IPI00844498   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCZ2
IntAct (EBI)Q8TCZ2
FunCoupENSG00000102181
BioGRIDCD99L2
STRING (EMBL)CD99L2
ZODIACCD99L2
Ontologies - Pathways
QuickGOQ8TCZ2
Ontology : AmiGOprotein binding  plasma membrane  focal adhesion  cell adhesion  integral component of membrane  
Ontology : EGO-EBIprotein binding  plasma membrane  focal adhesion  cell adhesion  integral component of membrane  
NDEx NetworkCD99L2
Atlas of Cancer Signalling NetworkCD99L2
Wikipedia pathwaysCD99L2
Orthology - Evolution
OrthoDB83692
GeneTree (enSembl)ENSG00000102181
Phylogenetic Trees/Animal Genes : TreeFamCD99L2
HOVERGENQ8TCZ2
HOGENOMQ8TCZ2
Homologs : HomoloGeneCD99L2
Homology/Alignments : Family Browser (UCSC)CD99L2
Gene fusions - Rearrangements
Fusion : MitelmanCD99L2/ARHGAP36 [Xq28/Xq26.1]  
Fusion : MitelmanCD99L2/CXorf66 [Xq28/Xq27.1]  [t(X;X)(q27;q28)]  
Fusion : MitelmanTTC28/CD99L2 [22q12.1/Xq28]  [t(X;22)(q28;q12)]  
Fusion: TCGACD99L2 Xq28 ARHGAP36 Xq26.1 BRCA
Fusion: TCGACD99L2 Xq28 CXorf66 Xq27.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCD99L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CD99L2
dbVarCD99L2
ClinVarCD99L2
1000_GenomesCD99L2 
Exome Variant ServerCD99L2
ExAC (Exome Aggregation Consortium)CD99L2 (select the gene name)
Genetic variants : HAPMAP83692
Genomic Variants (DGV)CD99L2 [DGVbeta]
DECIPHER (Syndromes)X:149934809-150067289  ENSG00000102181
CONAN: Copy Number AnalysisCD99L2 
Mutations
ICGC Data PortalCD99L2 
TCGA Data PortalCD99L2 
Broad Tumor PortalCD99L2
OASIS PortalCD99L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCD99L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCD99L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch CD99L2
DgiDB (Drug Gene Interaction Database)CD99L2
DoCM (Curated mutations)CD99L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CD99L2 (select a term)
intoGenCD99L2
Cancer3DCD99L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300846   
Orphanet
MedgenCD99L2
Genetic Testing Registry CD99L2
NextProtQ8TCZ2 [Medical]
TSGene83692
GENETestsCD99L2
Huge Navigator CD99L2 [HugePedia]
snp3D : Map Gene to Disease83692
BioCentury BCIQCD99L2
ClinGenCD99L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83692
Chemical/Pharm GKB GenePA30805
Clinical trialCD99L2
Miscellaneous
canSAR (ICR)CD99L2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCD99L2
EVEXCD99L2
GoPubMedCD99L2
iHOPCD99L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:59:32 CET 2017

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