Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CDADC1 (cytidine and dCMP deaminase domain containing 1)

Identity

Alias_symbol (synonym)NYD-SP15
Other aliasbA103J18.1
HGNC (Hugo) CDADC1
LocusID (NCBI) 81602
Atlas_Id 61628
Location 13q14.2  [Link to chromosome band 13q14]
Location_base_pair Starts at 49822047 and ends at 49867622 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EFL1 (15q25.2) / CDADC1 (13q14.2)VPS13B (8q22.2) / CDADC1 (13q14.2)VPS13B CDADC1
EFTUD1 CDADC1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDADC1   20299
Cards
Entrez_Gene (NCBI)CDADC1  81602  cytidine and dCMP deaminase domain containing 1
AliasesNYD-SP15; bA103J18.1
GeneCards (Weizmann)CDADC1
Ensembl hg19 (Hinxton)ENSG00000102543 [Gene_View]  chr13:49822047-49867622 [Contig_View]  CDADC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000102543 [Gene_View]  chr13:49822047-49867622 [Contig_View]  CDADC1 [Vega]
ICGC DataPortalENSG00000102543
TCGA cBioPortalCDADC1
AceView (NCBI)CDADC1
Genatlas (Paris)CDADC1
WikiGenes81602
SOURCE (Princeton)CDADC1
Genetics Home Reference (NIH)CDADC1
Genomic and cartography
GoldenPath hg19 (UCSC)CDADC1  -     chr13:49822047-49867622 +  13q14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CDADC1  -     13q14.2   [Description]    (hg38-Dec_2013)
EnsemblCDADC1 - 13q14.2 [CytoView hg19]  CDADC1 - 13q14.2 [CytoView hg38]
Mapping of homologs : NCBICDADC1 [Mapview hg19]  CDADC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK297400 AK312835 AL137554 AV648588 AY027525
RefSeq transcript (Entrez)NM_001193478 NM_030911
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)CDADC1
Cluster EST : UnigeneHs.388220 [ NCBI ]
CGAP (NCI)Hs.388220
Alternative Splicing GalleryENSG00000102543
Gene ExpressionCDADC1 [ NCBI-GEO ]   CDADC1 [ EBI - ARRAY_EXPRESS ]   CDADC1 [ SEEK ]   CDADC1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDADC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81602
GTEX Portal (Tissue expression)CDADC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWV3
Splice isoforms : SwissVarQ9BWV3
PhosPhoSitePlusQ9BWV3
Domaine pattern : Prosite (Expaxy)CYT_DCMP_DEAMINASES_1 (PS00903)    CYT_DCMP_DEAMINASES_2 (PS51747)   
Domains : Interpro (EBI)APOBEC/CMP_deaminase_Zn-bd    CMP_dCMP_Zn-bd    Cytidine_deaminase-like    dCMP_deaminase-rel   
Domain families : Pfam (Sanger)dCMP_cyt_deam_1 (PF00383)   
Domain families : Pfam (NCBI)pfam00383   
Conserved Domain (NCBI)CDADC1
DMDM Disease mutations81602
Blocks (Seattle)CDADC1
SuperfamilyQ9BWV3
Human Protein AtlasENSG00000102543
Peptide AtlasQ9BWV3
HPRD16693
IPIIPI00008444   IPI00513939   IPI00855793   IPI00979933   IPI01018321   IPI00844211   IPI00844098   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWV3
IntAct (EBI)Q9BWV3
FunCoupENSG00000102543
BioGRIDCDADC1
STRING (EMBL)CDADC1
ZODIACCDADC1
Ontologies - Pathways
QuickGOQ9BWV3
Ontology : AmiGOmetabolic process  zinc ion binding  hydrolase activity  
Ontology : EGO-EBImetabolic process  zinc ion binding  hydrolase activity  
NDEx NetworkCDADC1
Atlas of Cancer Signalling NetworkCDADC1
Wikipedia pathwaysCDADC1
Orthology - Evolution
OrthoDB81602
GeneTree (enSembl)ENSG00000102543
Phylogenetic Trees/Animal Genes : TreeFamCDADC1
HOVERGENQ9BWV3
HOGENOMQ9BWV3
Homologs : HomoloGeneCDADC1
Homology/Alignments : Family Browser (UCSC)CDADC1
Gene fusions - Rearrangements
Fusion: TCGAVPS13B CDADC1
Fusion: TCGAEFTUD1 CDADC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDADC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDADC1
dbVarCDADC1
ClinVarCDADC1
1000_GenomesCDADC1 
Exome Variant ServerCDADC1
ExAC (Exome Aggregation Consortium)CDADC1 (select the gene name)
Genetic variants : HAPMAP81602
Genomic Variants (DGV)CDADC1 [DGVbeta]
DECIPHER (Syndromes)13:49822047-49867622  ENSG00000102543
CONAN: Copy Number AnalysisCDADC1 
Mutations
ICGC Data PortalCDADC1 
TCGA Data PortalCDADC1 
Broad Tumor PortalCDADC1
OASIS PortalCDADC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDADC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDADC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDADC1
DgiDB (Drug Gene Interaction Database)CDADC1
DoCM (Curated mutations)CDADC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDADC1 (select a term)
intoGenCDADC1
Cancer3DCDADC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCDADC1
Genetic Testing Registry CDADC1
NextProtQ9BWV3 [Medical]
TSGene81602
GENETestsCDADC1
Huge Navigator CDADC1 [HugePedia]
snp3D : Map Gene to Disease81602
BioCentury BCIQCDADC1
ClinGenCDADC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81602
Chemical/Pharm GKB GenePA134884656
Clinical trialCDADC1
Miscellaneous
canSAR (ICR)CDADC1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDADC1
EVEXCDADC1
GoPubMedCDADC1
iHOPCDADC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:58:50 CET 2017

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