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CDAN1 (codanin 1)

Identity

Alias_namescongenital dyserythropoietic anemia, type I
Alias_symbol (synonym)CDA-I
CDAI
Other aliasCDA1
CDAN1A
DLT
PRO1295
HGNC (Hugo) CDAN1
LocusID (NCBI) 146059
Atlas_Id 61629
Location 15q15.2  [Link to chromosome band 15q15]
Location_base_pair Starts at 42723562 and ends at 42737219 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARID5B (10q21.2) / CDAN1 (15q15.2)CDAN1 (15q15.2) / ASPH (8q12.3)CDAN1 (15q15.2) / CLIC1 (6p21.33)
CDAN1 (15q15.2) / F13A1 (6p25.1)CDAN1 (15q15.2) / HM13 (20q11.21)CDAN1 (15q15.2) / PLEKHH3 (17q21.2)
CDAN1 (15q15.2) / UBTD2 (5q35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDAN1   1713
Cards
Entrez_Gene (NCBI)CDAN1  146059  codanin 1
AliasesCDA1; CDAI; CDAN1A; DLT; 
PRO1295
GeneCards (Weizmann)CDAN1
Ensembl hg19 (Hinxton)ENSG00000140326 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140326 [Gene_View]  chr15:42723562-42737219 [Contig_View]  CDAN1 [Vega]
ICGC DataPortalENSG00000140326
TCGA cBioPortalCDAN1
AceView (NCBI)CDAN1
Genatlas (Paris)CDAN1
WikiGenes146059
SOURCE (Princeton)CDAN1
Genetics Home Reference (NIH)CDAN1
Genomic and cartography
GoldenPath hg38 (UCSC)CDAN1  -     chr15:42723562-42737219 -  15q15.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDAN1  -     15q15.2   [Description]    (hg19-Feb_2009)
EnsemblCDAN1 - 15q15.2 [CytoView hg19]  CDAN1 - 15q15.2 [CytoView hg38]
Mapping of homologs : NCBICDAN1 [Mapview hg19]  CDAN1 [Mapview hg38]
OMIM224120   607465   
Gene and transcription
Genbank (Entrez)AF525398 AL133019 BC001092 BC008333 BC008334
RefSeq transcript (Entrez)NM_138477
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDAN1
Cluster EST : UnigeneHs.599232 [ NCBI ]
CGAP (NCI)Hs.599232
Alternative Splicing GalleryENSG00000140326
Gene ExpressionCDAN1 [ NCBI-GEO ]   CDAN1 [ EBI - ARRAY_EXPRESS ]   CDAN1 [ SEEK ]   CDAN1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDAN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146059
GTEX Portal (Tissue expression)CDAN1
Human Protein AtlasENSG00000140326-CDAN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IWY9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IWY9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IWY9
Splice isoforms : SwissVarQ8IWY9
PhosPhoSitePlusQ8IWY9
Domains : Interpro (EBI)Codanin-1_C   
Domain families : Pfam (Sanger)Codanin-1_C (PF15296)   
Domain families : Pfam (NCBI)pfam15296   
Conserved Domain (NCBI)CDAN1
DMDM Disease mutations146059
Blocks (Seattle)CDAN1
SuperfamilyQ8IWY9
Human Protein Atlas [tissue]ENSG00000140326-CDAN1 [tissue]
Peptide AtlasQ8IWY9
HPRD08470
IPIIPI00217439   IPI00386747   IPI00984493   
Protein Interaction databases
DIP (DOE-UCLA)Q8IWY9
IntAct (EBI)Q8IWY9
FunCoupENSG00000140326
BioGRIDCDAN1
STRING (EMBL)CDAN1
ZODIACCDAN1
Ontologies - Pathways
QuickGOQ8IWY9
Ontology : AmiGOprotein binding  nucleus  cytoplasm  cytosol  plasma membrane  chromatin organization  protein localization  negative regulation of DNA replication  endomembrane system  integral component of membrane  chromatin assembly  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  cytosol  plasma membrane  chromatin organization  protein localization  negative regulation of DNA replication  endomembrane system  integral component of membrane  chromatin assembly  
NDEx NetworkCDAN1
Atlas of Cancer Signalling NetworkCDAN1
Wikipedia pathwaysCDAN1
Orthology - Evolution
OrthoDB146059
GeneTree (enSembl)ENSG00000140326
Phylogenetic Trees/Animal Genes : TreeFamCDAN1
HOVERGENQ8IWY9
HOGENOMQ8IWY9
Homologs : HomoloGeneCDAN1
Homology/Alignments : Family Browser (UCSC)CDAN1
Gene fusions - Rearrangements
Fusion: Tumor Portal CDAN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDAN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDAN1
dbVarCDAN1
ClinVarCDAN1
1000_GenomesCDAN1 
Exome Variant ServerCDAN1
ExAC (Exome Aggregation Consortium)ENSG00000140326
GNOMAD BrowserENSG00000140326
Genetic variants : HAPMAP146059
Genomic Variants (DGV)CDAN1 [DGVbeta]
DECIPHERCDAN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDAN1 
Mutations
ICGC Data PortalCDAN1 
TCGA Data PortalCDAN1 
Broad Tumor PortalCDAN1
OASIS PortalCDAN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDAN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDAN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDAN1
DgiDB (Drug Gene Interaction Database)CDAN1
DoCM (Curated mutations)CDAN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDAN1 (select a term)
intoGenCDAN1
Cancer3DCDAN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM224120    607465   
Orphanet13886   
MedgenCDAN1
Genetic Testing Registry CDAN1
NextProtQ8IWY9 [Medical]
TSGene146059
GENETestsCDAN1
Target ValidationCDAN1
Huge Navigator CDAN1 [HugePedia]
snp3D : Map Gene to Disease146059
BioCentury BCIQCDAN1
ClinGenCDAN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146059
Chemical/Pharm GKB GenePA26249
Clinical trialCDAN1
Miscellaneous
canSAR (ICR)CDAN1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDAN1
EVEXCDAN1
GoPubMedCDAN1
iHOPCDAN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:42:01 CET 2017

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