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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

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CDC16 (cell division cycle 16)

Identity

Other namesANAPC6
APC6
CUT9
HGNC (Hugo) CDC16
LocusID (NCBI) 8881
Location 13q34
Location_base_pair Starts at 115000362 and ends at 115038150 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CDC16   1720
Cards
Entrez_Gene (NCBI)CDC16  8881  cell division cycle 16
GeneCards (Weizmann)CDC16
Ensembl hg19 (Hinxton)ENSG00000130177 [Gene_View]  chr13:115000362-115038150 [Contig_View]  CDC16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130177 [Gene_View]  chr13:115000362-115038150 [Contig_View]  CDC16 [Vega]
ICGC DataPortalENSG00000130177
cBioPortalCDC16
AceView (NCBI)CDC16
Genatlas (Paris)CDC16
WikiGenes8881
SOURCE (Princeton)CDC16
Genomic and cartography
GoldenPath hg19 (UCSC)CDC16  -     chr13:115000362-115038150 +  13q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CDC16  -     13q34   [Description]    (hg38-Dec_2013)
EnsemblCDC16 - 13q34 [CytoView hg19]  CDC16 - 13q34 [CytoView hg38]
Mapping of homologs : NCBICDC16 [Mapview hg19]  CDC16 [Mapview hg38]
OMIM603461   
Gene and transcription
Genbank (Entrez)AB209850 AF164598 AK095082 AK296424 AK315302
RefSeq transcript (Entrez)NM_001078645 NM_003903
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NT_024498 NW_001838087 NW_004929392
Consensus coding sequences : CCDS (NCBI)CDC16
Cluster EST : UnigeneHs.374127 [ NCBI ]
CGAP (NCI)Hs.374127
Alternative Splicing : Fast-db (Paris)GSHG0008323
Alternative Splicing GalleryENSG00000130177
Gene ExpressionCDC16 [ NCBI-GEO ]     CDC16 [ SEEK ]   CDC16 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13042 (Uniprot)
NextProtQ13042  [Medical]
With graphics : InterProQ13042
Splice isoforms : SwissVarQ13042 (Swissvar)
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical    TPR_1    TPR_repeat   
Related proteins : CluSTrQ13042
Domain families : Pfam (Sanger)TPR_1 (PF00515)    TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam00515    pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
DMDM Disease mutations8881
Blocks (Seattle)Q13042
PDB (SRS)3HYM   
PDB (PDBSum)3HYM   
PDB (IMB)3HYM   
PDB (RSDB)3HYM   
Human Protein AtlasENSG00000130177
Peptide AtlasQ13042
HPRD04587
IPIIPI00022091   IPI00376312   IPI00376313   IPI00556646   IPI01013499   IPI00642377   
Protein Interaction databases
DIP (DOE-UCLA)Q13042
IntAct (EBI)Q13042
FunCoupENSG00000130177
BioGRIDCDC16
IntegromeDBCDC16
STRING (EMBL)CDC16
Ontologies - Pathways
QuickGOQ13042
Ontology : AmiGOmitotic cell cycle  protein binding  nucleoplasm  anaphase-promoting complex  cytoplasm  centrosome  spindle  cytosol  spindle microtubule  mitotic nuclear division  regulation of mitosis  mitotic spindle assembly checkpoint  cell proliferation  anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  protein K11-linked ubiquitination  
Ontology : EGO-EBImitotic cell cycle  protein binding  nucleoplasm  anaphase-promoting complex  cytoplasm  centrosome  spindle  cytosol  spindle microtubule  mitotic nuclear division  regulation of mitosis  mitotic spindle assembly checkpoint  cell proliferation  anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  protein K11-linked ubiquitination  
Pathways : KEGGCell cycle    Oocyte meiosis    Ubiquitin mediated proteolysis    Progesterone-mediated oocyte maturation    HTLV-I infection   
Protein Interaction DatabaseCDC16
DoCM (Curated mutations)CDC16
Wikipedia pathwaysCDC16
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCDC16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDC16
dbVarCDC16
ClinVarCDC16
1000_GenomesCDC16 
Exome Variant ServerCDC16
SNP (GeneSNP Utah)CDC16
SNP : HGBaseCDC16
Genetic variants : HAPMAPCDC16
Genomic Variants (DGV)CDC16 [DGVbeta]
Mutations
ICGC Data PortalENSG00000130177 
Somatic Mutations in Cancer : COSMICCDC16 
CONAN: Copy Number AnalysisCDC16 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)13:115000362-115038150
Mutations and Diseases : HGMDCDC16
OMIM603461   
MedgenCDC16
NextProtQ13042 [Medical]
GENETestsCDC16
Disease Genetic AssociationCDC16
Huge Navigator CDC16 [HugePedia]  CDC16 [HugeCancerGEM]
snp3D : Map Gene to Disease8881
DGIdb (Drug Gene Interaction db)CDC16
General knowledge
Homologs : HomoloGeneCDC16
Homology/Alignments : Family Browser (UCSC)CDC16
Phylogenetic Trees/Animal Genes : TreeFamCDC16
Chemical/Protein Interactions : CTD8881
Chemical/Pharm GKB GenePA26256
Clinical trialCDC16
Cancer Resource (Charite)ENSG00000130177
Other databases
Probes
Litterature
PubMed71 Pubmed reference(s) in Entrez
CoreMineCDC16
GoPubMedCDC16
iHOPCDC16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 15:06:46 CET 2015

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jlhuret@AtlasGeneticsOncology.org.