Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CDC16 (cell division cycle 16)

Identity

Other namesANAPC6
APC6
CUT9
HGNC (Hugo) CDC16
LocusID (NCBI) 8881
Location 13q34
Location_base_pair Starts at 115000362 and ends at 115038150 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CDC16   1720
Cards
Entrez_Gene (NCBI)CDC16  8881  cell division cycle 16
GeneCards (Weizmann)CDC16
Ensembl (Hinxton)ENSG00000130177 [Gene_View]  chr13:115000362-115038150 [Contig_View]  CDC16 [Vega]
ICGC DataPortalENSG00000130177
cBioPortalCDC16
AceView (NCBI)CDC16
Genatlas (Paris)CDC16
WikiGenes8881
SOURCE (Princeton)NM_001078645 NM_003903
Genomic and cartography
GoldenPath (UCSC)CDC16  -  13q34   chr13:115000362-115038150 +  13q34   [Description]    (hg19-Feb_2009)
EnsemblCDC16 - 13q34 [CytoView]
Mapping of homologs : NCBICDC16 [Mapview]
OMIM603461   
Gene and transcription
Genbank (Entrez)AB209850 AF164598 AK095082 AK296424 AK315302
RefSeq transcript (Entrez)NM_001078645 NM_003903
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NT_024498 NW_001838087 NW_004929392
Consensus coding sequences : CCDS (NCBI)CDC16
Cluster EST : UnigeneHs.374127 [ NCBI ]
CGAP (NCI)Hs.374127
Alternative Splicing : Fast-db (Paris)GSHG0008323
Alternative Splicing GalleryENSG00000130177
Gene ExpressionCDC16 [ NCBI-GEO ]     CDC16 [ SEEK ]   CDC16 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13042 (Uniprot)
NextProtQ13042  [Medical]
With graphics : InterProQ13042
Splice isoforms : SwissVarQ13042 (Swissvar)
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom [organisation]   TPR-like_helical [organisation]   TPR_1 [organisation]   TPR_repeat [organisation]  
Related proteins : CluSTrQ13042
Domain families : Pfam (Sanger)TPR_1 (PF00515)    TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam00515    pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
DMDM Disease mutations8881
Blocks (Seattle)Q13042
PDB (SRS)3HYM   
PDB (PDBSum)3HYM   
PDB (IMB)3HYM   
PDB (RSDB)3HYM   
Human Protein AtlasENSG00000130177 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ13042
HPRD04587
IPIIPI00022091   IPI00376312   IPI00376313   IPI00556646   IPI01013499   IPI00642377   
Protein Interaction databases
DIP (DOE-UCLA)Q13042
IntAct (EBI)Q13042
FunCoupENSG00000130177
BioGRIDCDC16
InParanoidQ13042
Interologous Interaction database Q13042
IntegromeDBCDC16
STRING (EMBL)CDC16
Ontologies - Pathways
Ontology : AmiGOmitotic cell cycle  protein binding  nucleoplasm  anaphase-promoting complex  cytoplasm  centrosome  spindle  cytosol  spindle microtubule  mitosis  regulation of mitosis  mitotic spindle assembly checkpoint  cell proliferation  anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process  cell division  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  protein K11-linked ubiquitination  
Ontology : EGO-EBImitotic cell cycle  protein binding  nucleoplasm  anaphase-promoting complex  cytoplasm  centrosome  spindle  cytosol  spindle microtubule  mitosis  regulation of mitosis  mitotic spindle assembly checkpoint  cell proliferation  anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process  cell division  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  protein K11-linked ubiquitination  
Pathways : KEGGCell cycle    Oocyte meiosis    Ubiquitin mediated proteolysis    Progesterone-mediated oocyte maturation    HTLV-I infection   
Protein Interaction DatabaseCDC16
Wikipedia pathwaysCDC16
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CDC16
snp3D : Map Gene to Disease8881
SNP (GeneSNP Utah)CDC16
SNP : HGBaseCDC16
Genetic variants : HAPMAPCDC16
Exome VariantCDC16
1000_GenomesCDC16 
ICGC programENSG00000130177 
Somatic Mutations in Cancer : COSMICCDC16 
CONAN: Copy Number AnalysisCDC16 
Mutations and Diseases : HGMDCDC16
Genomic VariantsCDC16  CDC16 [DGVbeta]
dbVarCDC16
ClinVarCDC16
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM603461   
MedgenCDC16
GENETestsCDC16
Disease Genetic AssociationCDC16
Huge Navigator CDC16 [HugePedia]  CDC16 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCDC16
Homology/Alignments : Family Browser (UCSC)CDC16
Phylogenetic Trees/Animal Genes : TreeFamCDC16
Chemical/Protein Interactions : CTD8881
Chemical/Pharm GKB GenePA26256
Clinical trialCDC16
Cancer Resource (Charite)ENSG00000130177
Other databases
Probes
Litterature
PubMed70 Pubmed reference(s) in Entrez
CoreMineCDC16
iHOPCDC16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 16:48:59 CEST 2014

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