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CDC16 (cell division cycle 16)

Identity

Other namesANAPC6
APC6
CDC16Hs
CUT9
HGNC (Hugo) CDC16
LocusID (NCBI) 8881
Atlas_Id 40002
Location 13q34
Location_base_pair Starts at 115000362 and ends at 115038150 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CDC16 (13q34) / CDC16 (13q34)NPM2 (8p21.3) / CDC16 (13q34)RABL6 (9q34.3) / CDC16 (13q34)
UPF3A (13q34) / CDC16 (13q34)UPF3A 13q34 / CDC16 13q34

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDC16   1720
Cards
Entrez_Gene (NCBI)CDC16  8881  cell division cycle 16
GeneCards (Weizmann)CDC16
Ensembl hg19 (Hinxton)ENSG00000130177 [Gene_View]  chr13:115000362-115038150 [Contig_View]  CDC16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130177 [Gene_View]  chr13:115000362-115038150 [Contig_View]  CDC16 [Vega]
ICGC DataPortalENSG00000130177
TCGA cBioPortalCDC16
AceView (NCBI)CDC16
Genatlas (Paris)CDC16
WikiGenes8881
SOURCE (Princeton)CDC16
Genomic and cartography
GoldenPath hg19 (UCSC)CDC16  -     chr13:115000362-115038150 +  13q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CDC16  -     13q34   [Description]    (hg38-Dec_2013)
EnsemblCDC16 - 13q34 [CytoView hg19]  CDC16 - 13q34 [CytoView hg38]
Mapping of homologs : NCBICDC16 [Mapview hg19]  CDC16 [Mapview hg38]
OMIM603461   
Gene and transcription
Genbank (Entrez)AB209850 AF164598 AK095082 AK296424 AK315302
RefSeq transcript (Entrez)NM_001078645 NM_001318517 NM_001318518 NM_003903
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024498 NW_004929392
Consensus coding sequences : CCDS (NCBI)CDC16
Cluster EST : UnigeneHs.374127 [ NCBI ]
CGAP (NCI)Hs.374127
Alternative Splicing GalleryENSG00000130177
Gene ExpressionCDC16 [ NCBI-GEO ]   CDC16 [ EBI - ARRAY_EXPRESS ]   CDC16 [ SEEK ]   CDC16 [ MEM ]
Gene Expression Viewer (FireBrowse)CDC16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8881
GTEX Portal (Tissue expression)CDC16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13042 (Uniprot)
NextProtQ13042  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13042
Splice isoforms : SwissVarQ13042 (Swissvar)
PhosPhoSitePlusQ13042
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)TPR_8 (PF13181)   
Domain families : Pfam (NCBI)pfam13181   
Domain families : Smart (EMBL)TPR (SM00028)  
DMDM Disease mutations8881
Blocks (Seattle)CDC16
PDB (SRS)3HYM    4UI9    5A31   
PDB (PDBSum)3HYM    4UI9    5A31   
PDB (IMB)3HYM    4UI9    5A31   
PDB (RSDB)3HYM    4UI9    5A31   
Structural Biology KnowledgeBase3HYM    4UI9    5A31   
SCOP (Structural Classification of Proteins)3HYM    4UI9    5A31   
CATH (Classification of proteins structures)3HYM    4UI9    5A31   
SuperfamilyQ13042
Human Protein AtlasENSG00000130177
Peptide AtlasQ13042
HPRD04587
IPIIPI00022091   IPI00376312   IPI00376313   IPI00556646   IPI01013499   IPI00642377   
Protein Interaction databases
DIP (DOE-UCLA)Q13042
IntAct (EBI)Q13042
FunCoupENSG00000130177
BioGRIDCDC16
STRING (EMBL)CDC16
ZODIACCDC16
Ontologies - Pathways
QuickGOQ13042
Ontology : AmiGOprotein binding  nucleoplasm  anaphase-promoting complex  cytoplasm  centrosome  spindle  cytosol  spindle microtubule  mitotic nuclear division  regulation of mitotic nuclear division  cell proliferation  anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  cell division  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition  regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  protein K11-linked ubiquitination  
Ontology : EGO-EBIprotein binding  nucleoplasm  anaphase-promoting complex  cytoplasm  centrosome  spindle  cytosol  spindle microtubule  mitotic nuclear division  regulation of mitotic nuclear division  cell proliferation  anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  proteasome-mediated ubiquitin-dependent protein catabolic process  cell division  negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition  regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle  protein K11-linked ubiquitination  
Pathways : KEGGCell cycle    Oocyte meiosis    Ubiquitin mediated proteolysis    Progesterone-mediated oocyte maturation    HTLV-I infection   
NDEx Network
Atlas of Cancer Signalling NetworkCDC16
Wikipedia pathwaysCDC16
Orthology - Evolution
OrthoDB8881
GeneTree (enSembl)ENSG00000130177
Phylogenetic Trees/Animal Genes : TreeFamCDC16
Homologs : HomoloGeneCDC16
Homology/Alignments : Family Browser (UCSC)CDC16
Gene fusions - Rearrangements
Fusion: TCGAUPF3A 13q34 CDC16 13q34 THCA
Polymorphisms : SNP, variants
NCBI Variation ViewerCDC16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDC16
dbVarCDC16
ClinVarCDC16
1000_GenomesCDC16 
Exome Variant ServerCDC16
ExAC (Exome Aggregation Consortium)CDC16 (select the gene name)
Genetic variants : HAPMAP8881
Genomic Variants (DGV)CDC16 [DGVbeta]
Mutations
ICGC Data PortalCDC16 
TCGA Data PortalCDC16 
Broad Tumor PortalCDC16
OASIS PortalCDC16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDC16 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDC16
DgiDB (Drug Gene Interaction Database)CDC16
DoCM (Curated mutations)CDC16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDC16 (select a term)
intoGenCDC16
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)13:115000362-115038150  ENSG00000130177
CONAN: Copy Number AnalysisCDC16 
Mutations and Diseases : HGMDCDC16
OMIM603461   
MedgenCDC16
Genetic Testing Registry CDC16
NextProtQ13042 [Medical]
TSGene8881
GENETestsCDC16
Huge Navigator CDC16 [HugePedia]
snp3D : Map Gene to Disease8881
BioCentury BCIQCDC16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8881
Chemical/Pharm GKB GenePA26256
Clinical trialCDC16
Miscellaneous
canSAR (ICR)CDC16 (select the gene name)
Probes
Litterature
PubMed82 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDC16
EVEXCDC16
GoPubMedCDC16
iHOPCDC16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun May 8 18:40:35 CEST 2016

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