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CDC20B (cell division cycle 20B)

Identity

Alias_namesCDC20 cell division cycle 20 homolog B (S. cerevisiae)
cell division cycle 20 homolog B (S. cerevisiae)
Alias_symbol (synonym)FLJ37927
Other aliasG6VTS76519
HGNC (Hugo) CDC20B
LocusID (NCBI) 166979
Atlas_Id 61633
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 55112971 and ends at 55173177 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDC20B (5q11.2) / ARPC2 (2q35)CDC20B (5q11.2) / DHX29 (5q11.2)DNM1L (12p11.21) / CDC20B (5q11.2)
MIER3 (5q11.2) / CDC20B (5q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDC20B   24222
Cards
Entrez_Gene (NCBI)CDC20B  166979  cell division cycle 20B
AliasesG6VTS76519
GeneCards (Weizmann)CDC20B
Ensembl hg19 (Hinxton)ENSG00000164287 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164287 [Gene_View]  chr5:55112971-55173177 [Contig_View]  CDC20B [Vega]
ICGC DataPortalENSG00000164287
TCGA cBioPortalCDC20B
AceView (NCBI)CDC20B
Genatlas (Paris)CDC20B
WikiGenes166979
SOURCE (Princeton)CDC20B
Genetics Home Reference (NIH)CDC20B
Genomic and cartography
GoldenPath hg38 (UCSC)CDC20B  -     chr5:55112971-55173177 -  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDC20B  -     5q11.2   [Description]    (hg19-Feb_2009)
EnsemblCDC20B - 5q11.2 [CytoView hg19]  CDC20B - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBICDC20B [Mapview hg19]  CDC20B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB077043 AB077044 AB081750 AB086378 AI471861
RefSeq transcript (Entrez)NM_001145734 NM_001170402 NM_152623
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDC20B
Cluster EST : UnigeneHs.669184 [ NCBI ]
CGAP (NCI)Hs.669184
Alternative Splicing GalleryENSG00000164287
Gene ExpressionCDC20B [ NCBI-GEO ]   CDC20B [ EBI - ARRAY_EXPRESS ]   CDC20B [ SEEK ]   CDC20B [ MEM ]
Gene Expression Viewer (FireBrowse)CDC20B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)166979
GTEX Portal (Tissue expression)CDC20B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86Y33   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86Y33  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86Y33
Splice isoforms : SwissVarQ86Y33
PhosPhoSitePlusQ86Y33
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Cdc20/Fizzy    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)CDC20B
DMDM Disease mutations166979
Blocks (Seattle)CDC20B
SuperfamilyQ86Y33
Human Protein AtlasENSG00000164287
Peptide AtlasQ86Y33
HPRD13428
IPIIPI00748149   IPI00410318   IPI00384588   IPI00171693   IPI00216931   
Protein Interaction databases
DIP (DOE-UCLA)Q86Y33
IntAct (EBI)Q86Y33
FunCoupENSG00000164287
BioGRIDCDC20B
STRING (EMBL)CDC20B
ZODIACCDC20B
Ontologies - Pathways
QuickGOQ86Y33
Ontology : AmiGOprotein binding  anaphase-promoting complex binding  ubiquitin-protein transferase activator activity  positive regulation of ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein binding  anaphase-promoting complex binding  ubiquitin-protein transferase activator activity  positive regulation of ubiquitin protein ligase activity  
NDEx NetworkCDC20B
Atlas of Cancer Signalling NetworkCDC20B
Wikipedia pathwaysCDC20B
Orthology - Evolution
OrthoDB166979
GeneTree (enSembl)ENSG00000164287
Phylogenetic Trees/Animal Genes : TreeFamCDC20B
HOVERGENQ86Y33
HOGENOMQ86Y33
Homologs : HomoloGeneCDC20B
Homology/Alignments : Family Browser (UCSC)CDC20B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDC20B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDC20B
dbVarCDC20B
ClinVarCDC20B
1000_GenomesCDC20B 
Exome Variant ServerCDC20B
ExAC (Exome Aggregation Consortium)CDC20B (select the gene name)
Genetic variants : HAPMAP166979
Genomic Variants (DGV)CDC20B [DGVbeta]
DECIPHERCDC20B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDC20B 
Mutations
ICGC Data PortalCDC20B 
TCGA Data PortalCDC20B 
Broad Tumor PortalCDC20B
OASIS PortalCDC20B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDC20B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDC20B
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch CDC20B
DgiDB (Drug Gene Interaction Database)CDC20B
DoCM (Curated mutations)CDC20B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDC20B (select a term)
intoGenCDC20B
Cancer3DCDC20B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenCDC20B
Genetic Testing Registry CDC20B
NextProtQ86Y33 [Medical]
TSGene166979
GENETestsCDC20B
Target ValidationCDC20B
Huge Navigator CDC20B [HugePedia]
snp3D : Map Gene to Disease166979
BioCentury BCIQCDC20B
ClinGenCDC20B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD166979
Chemical/Pharm GKB GenePA145149217
Clinical trialCDC20B
Miscellaneous
canSAR (ICR)CDC20B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDC20B
EVEXCDC20B
GoPubMedCDC20B
iHOPCDC20B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 15:42:54 CEST 2017

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