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CDC42-IT1 (CDC42 intronic transcript 1)

Identity

Alias_namesCDC42 intronic transcript 1 (non-protein coding)
Other alias-
HGNC (Hugo) CDC42-IT1
LocusID (NCBI) 100874292
Atlas_Id 61641
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 22059197 and ends at 22064191 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CDC42-IT1   41317
Cards
Entrez_Gene (NCBI)CDC42-IT1  100874292  CDC42 intronic transcript 1
Aliases
GeneCards (Weizmann)CDC42-IT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:22059197-22064191 [Contig_View]  CDC42-IT1 [Vega]
TCGA cBioPortalCDC42-IT1
AceView (NCBI)CDC42-IT1
Genatlas (Paris)CDC42-IT1
WikiGenes100874292
SOURCE (Princeton)CDC42-IT1
Genetics Home Reference (NIH)CDC42-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)CDC42-IT1  -     chr1:22059197-22064191 +  1p36.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDC42-IT1  -     1p36.12   [Description]    (hg19-Feb_2009)
EnsemblCDC42-IT1 - 1p36.12 [CytoView hg19]  CDC42-IT1 - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBICDC42-IT1 [Mapview hg19]  CDC42-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086337
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDC42-IT1
Cluster EST : UnigeneHs.684696 [ NCBI ]
CGAP (NCI)Hs.684696
Gene ExpressionCDC42-IT1 [ NCBI-GEO ]   CDC42-IT1 [ EBI - ARRAY_EXPRESS ]   CDC42-IT1 [ SEEK ]   CDC42-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDC42-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874292
GTEX Portal (Tissue expression)CDC42-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDC42-IT1
DMDM Disease mutations100874292
Blocks (Seattle)CDC42-IT1
Protein Interaction databases
BioGRIDCDC42-IT1
STRING (EMBL)CDC42-IT1
ZODIACCDC42-IT1
Ontologies - Pathways
Huge Navigator CDC42-IT1 [HugePedia]
snp3D : Map Gene to Disease100874292
BioCentury BCIQCDC42-IT1
ClinGenCDC42-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874292
Clinical trialCDC42-IT1
Miscellaneous
canSAR (ICR)CDC42-IT1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDC42-IT1
EVEXCDC42-IT1
GoPubMedCDC42-IT1
iHOPCDC42-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 12:59:38 CET 2017

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