Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CDCA3 (cell division cycle associated 3)

Identity

Alias (NCBI)GRCC8
TOME-1
HGNC (Hugo) CDCA3
HGNC Alias symbTOME-1
GRCC8
HGNC Alias nametrigger of mitotic entry 1
LocusID (NCBI) 83461
Atlas_Id 53126
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 6848808 and ends at 6851930 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)CDCA3   14624
Cards
Entrez_Gene (NCBI)CDCA3    cell division cycle associated 3
AliasesGRCC8; TOME-1
GeneCards (Weizmann)CDCA3
Ensembl hg19 (Hinxton)ENSG00000111665 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111665 [Gene_View]  ENSG00000111665 [Sequence]  chr12:6848808-6851930 [Contig_View]  CDCA3 [Vega]
ICGC DataPortalENSG00000111665
TCGA cBioPortalCDCA3
AceView (NCBI)CDCA3
Genatlas (Paris)CDCA3
SOURCE (Princeton)CDCA3
Genetics Home Reference (NIH)CDCA3
Genomic and cartography
GoldenPath hg38 (UCSC)CDCA3  -     chr12:6848808-6851930 -  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDCA3  -     12p13.31   [Description]    (hg19-Feb_2009)
GoldenPathCDCA3 - 12p13.31 [CytoView hg19]  CDCA3 - 12p13.31 [CytoView hg38]
ImmunoBaseENSG00000111665
genome Data Viewer NCBICDCA3 [Mapview hg19]  
OMIM607749   
Gene and transcription
Genbank (Entrez)AK092246 AK093805 AK097957 AK291421 AK312843
RefSeq transcript (Entrez)NM_001297602 NM_001297603 NM_001297604 NM_001331019 NM_031299
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDCA3
Alternative Splicing GalleryENSG00000111665
Gene ExpressionCDCA3 [ NCBI-GEO ]   CDCA3 [ EBI - ARRAY_EXPRESS ]   CDCA3 [ SEEK ]   CDCA3 [ MEM ]
Gene Expression Viewer (FireBrowse)CDCA3 [ Firebrowse - Broad ]
GenevisibleExpression of CDCA3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83461
GTEX Portal (Tissue expression)CDCA3
Human Protein AtlasENSG00000111665-CDCA3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99618   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99618  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99618
Splice isoforms : SwissVarQ99618
PhosPhoSitePlusQ99618
Domains : Interpro (EBI)CDCA3   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDCA3
Blocks (Seattle)CDCA3
SuperfamilyQ99618
Human Protein Atlas [tissue]ENSG00000111665-CDCA3 [tissue]
Peptide AtlasQ99618
HPRD09670
IPIIPI00010428   IPI01013127   IPI00795815   
Protein Interaction databases
DIP (DOE-UCLA)Q99618
IntAct (EBI)Q99618
BioGRIDCDCA3
STRING (EMBL)CDCA3
ZODIACCDCA3
Ontologies - Pathways
QuickGOQ99618
Ontology : AmiGOprotein binding  cytosol  adherens junction  cell cycle  biological_process  protein ubiquitination  cell division  
Ontology : EGO-EBIprotein binding  cytosol  adherens junction  cell cycle  biological_process  protein ubiquitination  cell division  
NDEx NetworkCDCA3
Atlas of Cancer Signalling NetworkCDCA3
Wikipedia pathwaysCDCA3
Orthology - Evolution
OrthoDB83461
GeneTree (enSembl)ENSG00000111665
Phylogenetic Trees/Animal Genes : TreeFamCDCA3
HOGENOMQ99618
Homologs : HomoloGeneCDCA3
Homology/Alignments : Family Browser (UCSC)CDCA3
Gene fusions - Rearrangements
Fusion : QuiverCDCA3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDCA3 [hg38]
dbVarCDCA3
ClinVarCDCA3
MonarchCDCA3
1000_GenomesCDCA3 
Exome Variant ServerCDCA3
GNOMAD BrowserENSG00000111665
Varsome BrowserCDCA3
Genomic Variants (DGV)CDCA3 [DGVbeta]
DECIPHERCDCA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDCA3 
Mutations
ICGC Data PortalCDCA3 
TCGA Data PortalCDCA3 
Broad Tumor PortalCDCA3
OASIS PortalCDCA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDCA3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCDCA3
Mutations and Diseases : HGMDCDCA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDCA3
DgiDB (Drug Gene Interaction Database)CDCA3
DoCM (Curated mutations)CDCA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDCA3 (select a term)
intoGenCDCA3
Cancer3DCDCA3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607749   
Orphanet
DisGeNETCDCA3
MedgenCDCA3
Genetic Testing Registry CDCA3
NextProtQ99618 [Medical]
GENETestsCDCA3
Target ValidationCDCA3
Huge Navigator CDCA3 [HugePedia]
ClinGenCDCA3
Clinical trials, drugs, therapy
MyCancerGenomeCDCA3
Protein Interactions : CTD
Pharm GKB GenePA26276
PharosQ99618
Clinical trialCDCA3
Miscellaneous
canSAR (ICR)CDCA3 (select the gene name)
HarmonizomeCDCA3
DataMed IndexCDCA3
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXCDCA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri Jan 1 18:09:15 CET 2021

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