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CDCA3 (cell division cycle associated 3)

Identity

Alias_symbol (synonym)TOME-1
GRCC8
Other alias
HGNC (Hugo) CDCA3
LocusID (NCBI) 83461
Atlas_Id 53126
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 6848808 and ends at 6851930 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CDCA3   14624
Cards
Entrez_Gene (NCBI)CDCA3  83461  cell division cycle associated 3
AliasesGRCC8; TOME-1
GeneCards (Weizmann)CDCA3
Ensembl hg19 (Hinxton)ENSG00000111665 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111665 [Gene_View]  ENSG00000111665 [Sequence]  chr12:6848808-6851930 [Contig_View]  CDCA3 [Vega]
ICGC DataPortalENSG00000111665
TCGA cBioPortalCDCA3
AceView (NCBI)CDCA3
Genatlas (Paris)CDCA3
WikiGenes83461
SOURCE (Princeton)CDCA3
Genetics Home Reference (NIH)CDCA3
Genomic and cartography
GoldenPath hg38 (UCSC)CDCA3  -     chr12:6848808-6851930 -  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDCA3  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblCDCA3 - 12p13.31 [CytoView hg19]  CDCA3 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBICDCA3 [Mapview hg19]  CDCA3 [Mapview hg38]
OMIM607749   
Gene and transcription
Genbank (Entrez)AK092246 AK093805 AK097957 AK291421 AK312843
RefSeq transcript (Entrez)NM_001297602 NM_001297603 NM_001297604 NM_001331019 NM_031299
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDCA3
Cluster EST : UnigeneHs.709355 [ NCBI ]
CGAP (NCI)Hs.709355
Alternative Splicing GalleryENSG00000111665
Gene ExpressionCDCA3 [ NCBI-GEO ]   CDCA3 [ EBI - ARRAY_EXPRESS ]   CDCA3 [ SEEK ]   CDCA3 [ MEM ]
Gene Expression Viewer (FireBrowse)CDCA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83461
GTEX Portal (Tissue expression)CDCA3
Human Protein AtlasENSG00000111665-CDCA3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99618   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99618  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99618
Splice isoforms : SwissVarQ99618
PhosPhoSitePlusQ99618
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDCA3
DMDM Disease mutations83461
Blocks (Seattle)CDCA3
SuperfamilyQ99618
Human Protein Atlas [tissue]ENSG00000111665-CDCA3 [tissue]
Peptide AtlasQ99618
HPRD09670
IPIIPI00010428   IPI01013127   IPI00795815   
Protein Interaction databases
DIP (DOE-UCLA)Q99618
IntAct (EBI)Q99618
FunCoupENSG00000111665
BioGRIDCDCA3
STRING (EMBL)CDCA3
ZODIACCDCA3
Ontologies - Pathways
QuickGOQ99618
Ontology : AmiGOprotein binding  cytosol  cell-cell adherens junction  cell cycle  biological_process  protein ubiquitination  cell division  
Ontology : EGO-EBIprotein binding  cytosol  cell-cell adherens junction  cell cycle  biological_process  protein ubiquitination  cell division  
NDEx NetworkCDCA3
Atlas of Cancer Signalling NetworkCDCA3
Wikipedia pathwaysCDCA3
Orthology - Evolution
OrthoDB83461
GeneTree (enSembl)ENSG00000111665
Phylogenetic Trees/Animal Genes : TreeFamCDCA3
HOVERGENQ99618
HOGENOMQ99618
Homologs : HomoloGeneCDCA3
Homology/Alignments : Family Browser (UCSC)CDCA3
Gene fusions - Rearrangements
Fusion : QuiverCDCA3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDCA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDCA3
dbVarCDCA3
ClinVarCDCA3
1000_GenomesCDCA3 
Exome Variant ServerCDCA3
ExAC (Exome Aggregation Consortium)ENSG00000111665
GNOMAD BrowserENSG00000111665
Varsome BrowserCDCA3
Genetic variants : HAPMAP83461
Genomic Variants (DGV)CDCA3 [DGVbeta]
DECIPHERCDCA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDCA3 
Mutations
ICGC Data PortalCDCA3 
TCGA Data PortalCDCA3 
Broad Tumor PortalCDCA3
OASIS PortalCDCA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDCA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDCDCA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDCA3
DgiDB (Drug Gene Interaction Database)CDCA3
DoCM (Curated mutations)CDCA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDCA3 (select a term)
intoGenCDCA3
Cancer3DCDCA3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607749   
Orphanet
DisGeNETCDCA3
MedgenCDCA3
Genetic Testing Registry CDCA3
NextProtQ99618 [Medical]
TSGene83461
GENETestsCDCA3
Target ValidationCDCA3
Huge Navigator CDCA3 [HugePedia]
snp3D : Map Gene to Disease83461
BioCentury BCIQCDCA3
ClinGenCDCA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83461
Chemical/Pharm GKB GenePA26276
Clinical trialCDCA3
Miscellaneous
canSAR (ICR)CDCA3 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDCA3
EVEXCDCA3
GoPubMedCDCA3
iHOPCDCA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 10:57:06 CET 2018

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